Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq612 107 2e-18 >seq612 Length=74583 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 ||| |||||||| |||||||| ||||| | | |||| | | ||||| |||||||| || Sbjct 29745 CGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTGTTTGCC 29686 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 ||| |||| || | |||||| || || | || || ||||| |||||||| || Sbjct 29685 TGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTCTGCTT 29626 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | || || || |||| ||||| |||||||| || || || | || Sbjct 29625 CACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGTAAGTGT 29566 Query 19024 TTTGACAAAAATTTGCATT 19042 ||||||||||||||||||| Sbjct 29565 TTTGACAAAAATTTGCATT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569707805128