Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq49 172 1e-37 seq612 147 5e-30 seq602 138 3e-27 >seq49 Length=10291 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||| || || || |||||||| | || || ||||| ||||||||||||||||| Sbjct 9950 TCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGA 10009 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || || || || || ||||||||||| || || | || || ||||| || Sbjct 10010 GAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGG 10069 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||||||| || || || ||| ||||||||||| | ||| || || ||| || Sbjct 10070 TATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAAC 10129 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || |||||||||||||| || || || ||||| Sbjct 10130 TTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq612 Length=74583 Score = 147 bits (162), Expect = 5e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || |||||||||||||| ||||| || ||||| || || Sbjct 29760 AAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATC 29701 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| || |||||||| || | ||| || || ||||| |||||||| || || Sbjct 29700 CTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTC 29641 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 || || || ||||| ||||| || | ||| || || || || || || ||||| | Sbjct 29640 TTGGATTTTCTGCTTC-ACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGG 29582 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || ||||||||||| ||||| || |||||| Sbjct 29581 TCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq602 Length=19998 Score = 138 bits (152), Expect = 3e-27 Identities = 396/603 (66%), Gaps = 21/603 (3%) Strand=Plus/Minus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| ||||| |||||||| | ||| || || ||| | || ||| || | ||| Sbjct 7423 AGATTCGTGATTTTTCCAATCAAATATGAGGAAATCTGGCTTTTTTATAAAAAGTCGGTT 7364 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 ||||| || ||||| || ||||| || || ||||| | || ||| ||||| | Sbjct 7363 GCTTCCTTCTGGACGGTCGAAGAGGTGGACCTGTCAAAGGATCTAACCCATTGGGCGTCT 7304 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 | || | ||| | ||||| ||| | || | || |||||||||| ||| Sbjct 7303 CTGAATGACGGGGAACGCCATTTTATCTCTCACGTTTTGGCCTTTTTTGCAGCCTCCGAT 7244 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 || || || || |||||| |||| | || | ||||| || || || || || Sbjct 7243 GGAATTGTAAATGAAAATTTAGTTGTTCGCTTTGCTAGGGAGGTGCAAATCCCAGAGGCT 7184 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 | | |||||||| ||||| || || |||||||| ||||| |||||||| || Sbjct 7183 CGTTTCTTTTACGGGTTCCAAATCATGATGGAAAATATCCATTCTGAGATGTATTCCCTT 7124 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATT-TTCTTCTATGAG 269058 | || || || ||||| ||| || || | | ||| || ||| | | Sbjct 7123 CTGATTGACACATATATTCGCGAT------GAGCAGGAGCGTCTAAAATTGTTCAACGCC 7070 Query 269059 AAC---TATGGACTGTG---TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AA 269108 | | ||| | | ||| ||||||| | |||||||| |||| ||||| || Sbjct 7069 ATCGAATATATCCCTAGCATTGA-AAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAAA 7011 Query 269109 ACGATA-GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 | | | || | | || || ||| | | ||||| |||||||| || || || |||||| Sbjct 7010 TCCAGATGCCCCCTTTTCGCAGAGAC--TGGTTGCATTTGCCGCAGTTGAGGGCATATTC 6953 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 ||||| ||||| ||||| || ||||||||| | || || | || || ||||| || | Sbjct 6952 TTTTCCGGGTCGTTTGCAGCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCTT 6893 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTA 269287 ||||| || ||||| |||| || || ||||| ||| |||| ||| || |||||| || Sbjct 6892 ACTTTTTCCAACGAGCTGATCAGTAGAGACGAGGGTCTACATACCGAGTTTGCTTGTCTA 6833 Query 269288 TTA 269290 ||| Sbjct 6832 TTA 6830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151389371597296