Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq49 172 1e-37
seq612 147 5e-30
seq602 138 3e-27
>seq49
Length=10291
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
||| |||| || || || |||||||| | || || ||||| |||||||||||||||||
Sbjct 9950 TCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGA 10009
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
|| ||||| || || || || || ||||||||||| || || | || || ||||| ||
Sbjct 10010 GAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGG 10069
Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511
|||||||||||| || || || ||| ||||||||||| | ||| || || ||| ||
Sbjct 10070 TATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAAC 10129
Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || || |||||||||||||| || || || |||||
Sbjct 10130 TTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq612
Length=74583
Score = 147 bits (162), Expect = 5e-30
Identities = 163/215 (76%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || || |||||||||||||| ||||| || ||||| || ||
Sbjct 29760 AAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATC 29701
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || ||||| || |||||||| || | ||| || || ||||| |||||||| || ||
Sbjct 29700 CTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTC 29641
Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
|| || || ||||| ||||| || | ||| || || || || || || ||||| |
Sbjct 29640 TTGGATTTTCTGCTTC-ACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGG 29582
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|||| || ||||||||||| ||||| || ||||||
Sbjct 29581 TCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
>seq602
Length=19998
Score = 138 bits (152), Expect = 3e-27
Identities = 396/603 (66%), Gaps = 21/603 (3%)
Strand=Plus/Minus
Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759
||||| ||||| |||||||| | ||| || || ||| | || ||| || | |||
Sbjct 7423 AGATTCGTGATTTTTCCAATCAAATATGAGGAAATCTGGCTTTTTTATAAAAAGTCGGTT 7364
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819
||||| || ||||| || ||||| || || ||||| | || ||| ||||| |
Sbjct 7363 GCTTCCTTCTGGACGGTCGAAGAGGTGGACCTGTCAAAGGATCTAACCCATTGGGCGTCT 7304
Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879
| || | ||| | ||||| ||| | || | || |||||||||| |||
Sbjct 7303 CTGAATGACGGGGAACGCCATTTTATCTCTCACGTTTTGGCCTTTTTTGCAGCCTCCGAT 7244
Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939
|| || || || |||||| |||| | || | ||||| || || || || ||
Sbjct 7243 GGAATTGTAAATGAAAATTTAGTTGTTCGCTTTGCTAGGGAGGTGCAAATCCCAGAGGCT 7184
Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999
| | |||||||| ||||| || || |||||||| ||||| |||||||| ||
Sbjct 7183 CGTTTCTTTTACGGGTTCCAAATCATGATGGAAAATATCCATTCTGAGATGTATTCCCTT 7124
Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATT-TTCTTCTATGAG 269058
| || || || ||||| ||| || || | | ||| || ||| | |
Sbjct 7123 CTGATTGACACATATATTCGCGAT------GAGCAGGAGCGTCTAAAATTGTTCAACGCC 7070
Query 269059 AAC---TATGGACTGTG---TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AA 269108
| | ||| | | ||| ||||||| | |||||||| |||| ||||| ||
Sbjct 7069 ATCGAATATATCCCTAGCATTGA-AAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAAA 7011
Query 269109 ACGATA-GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167
| | | || | | || || ||| | | ||||| |||||||| || || || ||||||
Sbjct 7010 TCCAGATGCCCCCTTTTCGCAGAGAC--TGGTTGCATTTGCCGCAGTTGAGGGCATATTC 6953
Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227
||||| ||||| ||||| || ||||||||| | || || | || || ||||| || |
Sbjct 6952 TTTTCCGGGTCGTTTGCAGCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCTT 6893
Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTA 269287
||||| || ||||| |||| || || ||||| ||| |||| ||| || |||||| ||
Sbjct 6892 ACTTTTTCCAACGAGCTGATCAGTAGAGACGAGGGTCTACATACCGAGTTTGCTTGTCTA 6833
Query 269288 TTA 269290
|||
Sbjct 6832 TTA 6830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151389371597296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |