Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq602 134 1e-26
>seq602
Length=19998
Score = 134 bits (148), Expect = 1e-26
Identities = 565/890 (63%), Gaps = 22/890 (2%)
Strand=Plus/Plus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||| || | |||| | ||||| ||||| || | |||||| || || || |
Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
||||| |||||||| || ||||| ||| | | ||| | |||| ||| | || |
Sbjct 6606 TCCATGAAATCAAACGGGTTTTCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCAG 6664
Query 21305 AA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363
|| |||||| || || || ||||| || |||||| |||||||||| || |
Sbjct 6665 AAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTAG 6724
Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423
| || || |||| | ||||||||| | ||| ||| ||||| ||| | || ||
Sbjct 6725 GTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAAT 6784
Query 21424 ---ATTTATTATC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479
|| ||| ||| | ||| | | || | | || | | | ||| |
Sbjct 6785 GGCATATATAATCGCCGGATCTGCC----GGCTTTTTCAGGTGGGAATGTAATAGACAAG 6840
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
|||| || ||| | ||| || || ||||| || | || || ||||| || | || |
Sbjct 6841 CAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAG 6900
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599
|||| | || | |||||||| |||||| || | ||||| | || |||||||| ||||
Sbjct 6901 GCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGC 6960
Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCG--TATGTAGATTCTTTATCCAATAT 21657
||||||| || ||||||||||| | || || || | | | ||| || ||
Sbjct 6961 CCTCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAAT 7018
Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717
||| || |||||||| || |||| || ||| | | || || || || || ||
Sbjct 7019 CCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAA 7078
Query 21718 AAGATGAtttt----tttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773
| ||||| || | ||||| || |||||
Sbjct 7079 CA----ATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACA 7134
Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833
| |||||||| |||||||| ||| || || || |||||||| | | |||||||
Sbjct 7135 TCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGA 7194
Query 21834 ATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893
||| ||||| | ||| || | | || ||||||||||| |||||||| ||| |
Sbjct 7195 TTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTG 7254
Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953
||||||| ||||| | | ||||||| ||||| || | | |||||
Sbjct 7255 CAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAAT 7314
Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013
|| ||| ||||| | || || ||||| ||||| ||| ||||| | |||||
Sbjct 7315 GGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTT 7374
Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTG 22063
|||| | || |||||| || | |||| | |||||||| || || || |||
Sbjct 7375 TATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTG 7424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531896730958880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |