Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq602 134 1e-26 >seq602 Length=19998 Score = 134 bits (148), Expect = 1e-26 Identities = 565/890 (63%), Gaps = 22/890 (2%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || | |||| | ||||| ||||| || | |||||| || || || | Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| |||||||| || ||||| ||| | | ||| | |||| ||| | || | Sbjct 6606 TCCATGAAATCAAACGGGTTTTCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCAG 6664 Query 21305 AA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || |||||| || || || ||||| || |||||| |||||||||| || | Sbjct 6665 AAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTAG 6724 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | || || |||| | ||||||||| | ||| ||| ||||| ||| | || || Sbjct 6725 GTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAAT 6784 Query 21424 ---ATTTATTATC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 || ||| ||| | ||| | | || | | || | | | ||| | Sbjct 6785 GGCATATATAATCGCCGGATCTGCC----GGCTTTTTCAGGTGGGAATGTAATAGACAAG 6840 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| || ||| | ||| || || ||||| || | || || ||||| || | || | Sbjct 6841 CAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAG 6900 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| | || | |||||||| |||||| || | ||||| | || |||||||| |||| Sbjct 6901 GCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGC 6960 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCG--TATGTAGATTCTTTATCCAATAT 21657 ||||||| || ||||||||||| | || || || | | | ||| || || Sbjct 6961 CCTCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAAT 7018 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 ||| || |||||||| || |||| || ||| | | || || || || || || Sbjct 7019 CCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAA 7078 Query 21718 AAGATGAtttt----tttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773 | ||||| || | ||||| || ||||| Sbjct 7079 CA----ATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACA 7134 Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833 | |||||||| |||||||| ||| || || || |||||||| | | ||||||| Sbjct 7135 TCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGA 7194 Query 21834 ATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||| ||||| | ||| || | | || ||||||||||| |||||||| ||| | Sbjct 7195 TTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTG 7254 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 ||||||| ||||| | | ||||||| ||||| || | | ||||| Sbjct 7255 CAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAAT 7314 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 || ||| ||||| | || || ||||| ||||| ||| ||||| | ||||| Sbjct 7315 GGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTT 7374 Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTG 22063 |||| | || |||||| || | |||| | |||||||| || || || ||| Sbjct 7375 TATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTG 7424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896730958880