Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq602 185 1e-41
seq113 123 3e-23
>seq602
Length=19998
Score = 185 bits (204), Expect = 1e-41
Identities = 399/593 (67%), Gaps = 13/593 (2%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||| || ||||||||||||||||| || || ||||||||||| || ||
Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| || || |||||||| | |||||| |||| || || || || ||||||||
Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGT- 33480
|| || || ||||| ||||| |||| ||||||| | | ||| ||| || |
Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014
Query 33481 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538
||||| || |||||| | ||| || |||| | | ||| || ||| ||||| |
Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074
Query 33539 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTA 33594
| | | | |||| | | || ||| || ||| || || |||| ||| |
Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130
Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654
||||| || ||||| || ||||| || || || || ||||| || | | ||||||
Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190
Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714
| || || || || || ||| || | | ||||||||||| || ||||| || |
Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250
Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774
||||||||||| ||||| || || ||||||| ||| | | || |
Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCC 7310
Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
|||| | | ||| || || | || || ||||| || ||||| || || || | | |
Sbjct 7311 CAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGAC 7370
Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887
|||||||| | |||||| || | ||||| |||||| ||||| || |||||
Sbjct 7371 TTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423
>seq113
Length=5777
Score = 123 bits (136), Expect = 3e-23
Identities = 691/1095 (63%), Gaps = 17/1095 (2%)
Strand=Plus/Plus
Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783
||||| || ||||| || || |||||||||||| |||| || ||| || | |
Sbjct 4064 CCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGACA 4123
Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843
||||| | || | ||| ||||| ||||| |||||| | | |||||| | ||||
Sbjct 4124 GGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTTGGCAACATAA 4183
Query 62844 TTCAGTTTGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAAGGCAACAGAT 62900
| || | ||||||||| ||| || || | |||||| | |||| ||
Sbjct 4184 TGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATCGGAAGTGCAATGGAA 4243
Query 62901 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958
|| || |||||||||| ||||||| | || | || || || || || || || |
Sbjct 4244 GCGAGGTTACAAACGGAAACCTCATCTTTTGATGAG--TACTGGATGATTTCTGTACACA 4301
Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018
|| | ||||| || || | |||| ||||||| |||| ||| || | ||| |
Sbjct 4302 AGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTTGCAAGAATCTT 4361
Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078
|| | || ||| |||| || || ||||| | || | || | ||| || | |||||
Sbjct 4362 TAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGCATACCAGAGCT 4421
Query 63079 CTCGAGCCTTTATTATAGATTTGTATCT---CCTTTCTCTTTCGTATAGTGTATACAATC 63135
| | || || | || | | ||||| | | | ||| | ||| ||
Sbjct 4422 TTTGGGCAGGGATCGTT--TTACGACCAAGACCTTTGGCCT-CATATGAAGCATATAACT 4478
Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195
||| ||||| ||||||| | | ||| || ||| |||| ||||| | | |
Sbjct 4479 CTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGTCATTTGGACAGAAAAGAG 4538
Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255
|||| || || | || |||||||||||| || ||||| || ||||| || || ||
Sbjct 4539 TCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCATAGGGCATAAA 4598
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315
| ||||| ||| | | || || ||||| ||| || || | ||| | ||| | |
Sbjct 4599 AAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCCAAGAAATCGA 4658
Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375
|| ||||| ||||| || ||||| || || || | | ||||| ||||| || || |
Sbjct 4659 AAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGC 4718
Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435
| ||||| | |||| || || | ||||| || | | ||| || | ||||||||||
Sbjct 4719 CTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACTATACCGTTTG 4778
Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGA 63494
| ||| || || | ||||| ||| ||| | |||||| || ||| |||
Sbjct 4779 AGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGGATATGA-AGA 4837
Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554
|| | ||||| || || || ||||| ||| ||| | |||||||| || ||
Sbjct 4838 CCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCATATATTCCG 4897
Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614
|| ||| || |||| || | ||||||| || | ||| | || ||
Sbjct 4898 GTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGCCGCGGTGTA 4957
Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674
|| |||||||| | ||| || || || || || ||| | ||| | | ||| |||
Sbjct 4958 CCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATCAAATTATAC 5017
Query 63675 GTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733
|| || || || ||||| | || || | ||||| || | || || | ||| | ||
Sbjct 5018 GTTTCGATGGCAGAGTCGACGTCTTCACCG-TGAATGCCAAGCGCAACTCTCATGATCAG 5076
Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793
| ||| || | || || | |||| | ||| ||| || || || || | ||
Sbjct 5077 ATACTGGGGACGCTCCACAACCTTGCCCCTGATTCTCAGCAGATACGAACGCTCAAGGGT 5136
Query 63794 TTTAAAACCAAAATA 63808
|||||| ||||||||
Sbjct 5137 TTTAAATCCAAAATA 5151
Score = 107 bits (118), Expect = 2e-18
Identities = 170/241 (71%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|| |||| ||||| | | ||| || || || || ||||| ||||| || || |||||
Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT--AACTCGGATCTGCT 62111
|| |||| ||||||||||||| || || || || || || || || ||
Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448
Query 62112 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62171
|| || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| |
Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508
Query 62172 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62231
||||| ||||||||||||||||||| | || |||||| || | || ||||| |||
Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568
Query 62232 A 62232
|
Sbjct 3569 A 3569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622942434453920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |