Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq602 185 1e-41 seq113 123 3e-23 >seq602 Length=19998 Score = 185 bits (204), Expect = 1e-41 Identities = 399/593 (67%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| || ||||||||||||||||| || || ||||||||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || |||||||| | |||||| |||| || || || || |||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGT- 33480 || || || ||||| ||||| |||| ||||||| | | ||| ||| || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014 Query 33481 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| || |||||| | ||| || |||| | | ||| || ||| ||||| | Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074 Query 33539 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTA 33594 | | | | |||| | | || ||| || ||| || || |||| ||| | Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 ||||| || ||||| || ||||| || || || || ||||| || | | |||||| Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | || || || || || ||| || | | ||||||||||| || ||||| || | Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 ||||||||||| ||||| || || ||||||| ||| | | || | Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCC 7310 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 |||| | | ||| || || | || || ||||| || ||||| || || || | | | Sbjct 7311 CAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGAC 7370 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 |||||||| | |||||| || | ||||| |||||| ||||| || ||||| Sbjct 7371 TTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 123 bits (136), Expect = 3e-23 Identities = 691/1095 (63%), Gaps = 17/1095 (2%) Strand=Plus/Plus Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| || ||||| || || |||||||||||| |||| || ||| || | | Sbjct 4064 CCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGACA 4123 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||| | || | ||| ||||| ||||| |||||| | | |||||| | |||| Sbjct 4124 GGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTTGGCAACATAA 4183 Query 62844 TTCAGTTTGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAAGGCAACAGAT 62900 | || | ||||||||| ||| || || | |||||| | |||| || Sbjct 4184 TGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATCGGAAGTGCAATGGAA 4243 Query 62901 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958 || || |||||||||| ||||||| | || | || || || || || || || | Sbjct 4244 GCGAGGTTACAAACGGAAACCTCATCTTTTGATGAG--TACTGGATGATTTCTGTACACA 4301 Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018 || | ||||| || || | |||| ||||||| |||| ||| || | ||| | Sbjct 4302 AGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTTGCAAGAATCTT 4361 Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078 || | || ||| |||| || || ||||| | || | || | ||| || | ||||| Sbjct 4362 TAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGCATACCAGAGCT 4421 Query 63079 CTCGAGCCTTTATTATAGATTTGTATCT---CCTTTCTCTTTCGTATAGTGTATACAATC 63135 | | || || | || | | ||||| | | | ||| | ||| || Sbjct 4422 TTTGGGCAGGGATCGTT--TTACGACCAAGACCTTTGGCCT-CATATGAAGCATATAACT 4478 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 ||| ||||| ||||||| | | ||| || ||| |||| ||||| | | | Sbjct 4479 CTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGTCATTTGGACAGAAAAGAG 4538 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| || || | || |||||||||||| || ||||| || ||||| || || || Sbjct 4539 TCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCATAGGGCATAAA 4598 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| ||| | | || || ||||| ||| || || | ||| | ||| | | Sbjct 4599 AAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCCAAGAAATCGA 4658 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 || ||||| ||||| || ||||| || || || | | ||||| ||||| || || | Sbjct 4659 AAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGC 4718 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 | ||||| | |||| || || | ||||| || | | ||| || | |||||||||| Sbjct 4719 CTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACTATACCGTTTG 4778 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGA 63494 | ||| || || | ||||| ||| ||| | |||||| || ||| ||| Sbjct 4779 AGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGGATATGA-AGA 4837 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || | ||||| || || || ||||| ||| ||| | |||||||| || || Sbjct 4838 CCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCATATATTCCG 4897 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || ||| || |||| || | ||||||| || | ||| | || || Sbjct 4898 GTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGCCGCGGTGTA 4957 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || |||||||| | ||| || || || || || ||| | ||| | | ||| ||| Sbjct 4958 CCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATCAAATTATAC 5017 Query 63675 GTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || || || || ||||| | || || | ||||| || | || || | ||| | || Sbjct 5018 GTTTCGATGGCAGAGTCGACGTCTTCACCG-TGAATGCCAAGCGCAACTCTCATGATCAG 5076 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 | ||| || | || || | |||| | ||| ||| || || || || | || Sbjct 5077 ATACTGGGGACGCTCCACAACCTTGCCCCTGATTCTCAGCAGATACGAACGCTCAAGGGT 5136 Query 63794 TTTAAAACCAAAATA 63808 |||||| |||||||| Sbjct 5137 TTTAAATCCAAAATA 5151 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 || |||| ||||| | | ||| || || || || ||||| ||||| || || ||||| Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT--AACTCGGATCTGCT 62111 || |||| ||||||||||||| || || || || || || || || || Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 62112 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62171 || || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 62172 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62231 ||||| ||||||||||||||||||| | || |||||| || | || ||||| ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 62232 A 62232 | Sbjct 3569 A 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942434453920