Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq113 194 4e-44 >seq113 Length=5777 Score = 194 bits (214), Expect = 4e-44 Identities = 1101/1734 (63%), Gaps = 37/1734 (2%) Strand=Plus/Minus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||| || || || ||| || || | ||| | ||||| |||| || || | || | Sbjct 5096 TTGTGGAGCGTCCCCAGTATCTGATCATGAGAGTTGCGCTTGGCATTCACGGTGAAGACG 5037 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC---GTGTATTCACGCACGCCA 363559 | || | || || ||||| ||||| || | || ||| | | ||||| || ||| Sbjct 5036 TCGACTCTGCCATCGAAACGTATAA--TTTGATGT-CTCAGCGGATGTTCACCCATGCCT 4980 Query 363560 CGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAA 363619 | ||||| | | ||||| || || | || ||| | || || || ||| | | Sbjct 4979 CCCCAACCCTTTTTAATGCCGGTACACCGCGGCCCCAGCTTTCATCCTGTTTTTTGATTG 4920 Query 363620 AAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTT 363679 ||||| |||||||| ||| || || | |||||| || || | ||||| | ||| Sbjct 4919 CAATGACTGACGATTCGATCACCGGAATATATGACACCCTGAAAACATGTGCATTGATTA 4860 Query 363680 CCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACA 363739 |||| ||| || || ||||| | ||||| ||| | | || ||| | Sbjct 4859 GCAAGTCTGCCGGGGGTGTTGGTCTTCATATCCATAATATAAGAGCCTCTGGGTCTTATA 4800 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 || || ||||| || ||||| || || | || |||||||||||||| | | ||| | Sbjct 4799 TTGCTGGAACAGGTGGCTACTCAAACGGTATAGTCCCCATGCTTCGTGTCTATAACATGA 4740 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 |||| | || ||||| || || || || || || || ||||| || ||| | | Sbjct 4739 CTGCACGATATGTCGATCAAGGCGGGAATAAACGACCTGGCGCCTTTGCAATTTATTTGG 4680 Query 363860 AGCCTCATCATGCCGATATTTTTGAGTTTCTT-GAGCTCCGGAAAAACACGGGAAAAGAG 363918 |||| || || ||| |||| || |||||| || | |||||| |||||||| Sbjct 4679 AGCCCTGGCACGCTGATGTTTTCGA-TTTCTTGGATTTAAAGAAAAATTTTGGAAAAGAC 4621 Query 363919 GA-ATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 || | ||||| | ||||| || ||||| || ||| | | || | || ||||| || Sbjct 4620 GAGGGTCGGTGCA-GGGATCTTTTTTATGCCCTATGGATACCCGATCTGTTCATGAAACG 4562 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 |||||| || | || ||| | || || || ||| | || ||||||| | ||||| Sbjct 4561 AGTGGAGCAAGATGGGATGTGGACTCTTTTCTGTCCAAATGACGCTCCAGGTTTGTCCGA 4502 Query 364038 -TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096 ||| ||||| || | || | |||| | ||||| | | || | || Sbjct 4501 CTGT-TGGGGACCGGAGTTTGAAGAGTTATATGCTTCATATGAGGCCAAAGGTCTTGGTC 4443 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 |||| || || || || || ||||| |||| |||||| | ||| |||| | || || | Sbjct 4442 GTAAAACGATCCCTGCCCAAAAGCTCTGGTATGCCATTCTTGATGCGCAAGTGGAAACCG 4383 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 |||| || || ||| | | |||||||| |||||| ||||| || || | |||| | Sbjct 4382 GAACGCCATACATGCTCTTTAAAGATTCTTGCAACGCAAAGTCTAATCAAAAAAACCTGG 4323 Query 364217 GTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 | || | ||| || | ||| | ||||| || || || | ||| | | || ||| Sbjct 4322 GGACCA-TCAAAAGCTCAAACTTGTGTACAGAAATCATCCAGTACTCATCAAAAGATGAG 4264 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATGGTACT 364332 | |||| |||||||| || || || || |||||| |||| | ||| || || || Sbjct 4263 GTTTCCGTTTGTAACCTCGCTTCCATTGCACTTCCGATGTTTATCAAAAGCGACGGGTCT 4204 Query 364333 TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTT 364392 ||||| | || || | || || | | || ||||| | || || Sbjct 4203 TTTGATTTTGATATGCTACATTATGTTGCCAAAGTGGTAACAAAAAATCTTAATAATATT 4144 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCG 364452 ||||| || | ||||| | || || ||| || |||||| | ||| | ||| Sbjct 4143 ATCGATGTCAACTTCTATCCTGTCGAGGAGGCTAGGCGATCAAATATGAGACATAGACCG 4084 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTG--ACGTTTTTATGATGCTCAAGATGGCATTTG 364510 ||||| |||| || || || || || | ||||| ||| |||| ||| ||| | |||| Sbjct 4083 ATTGGAATTGGCGTCCAAGGTCTTGCAGATACGTTCTTACGATG--CAAAATGCCTTTTG 4026 Query 364511 ATTCGCCTGACGCTCGTG--TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568 | ||| || || | || | |||| |||| ||||| ||||| || ||| || Sbjct 4025 ACAGCCCTCCAGCGCGAGAATTGAACATAA--AGATATTTGAGACAATATACCATGCTGC 3968 Query 364569 -AATGACTGC-TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGG 364626 ||| || |||||||| |||| | | || | ||| |||| |||| Sbjct 3967 TCTTGA--GCAGTCGTGTGAGCTGGCTCAGCAAACTGGTACATACGAGTCTTACCAGGGA 3910 Query 364627 TCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA 364686 ||| |||| ||||| | || || || || | |||||||| |||||| | Sbjct 3909 AGCCCCATTTCTCAGGGCATCTTTCAATTCGACATGTGGAATGTTGTGCCATCATCTTTA 3850 Query 364687 TGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTT 364746 ||| | |||||| | || ||| | || ||| ||| |||| | | |||||| | | Sbjct 3849 TGGGATTGGGATTCCCTTCGTGCGAAGGTTGCCAAGTATGGCGTTAGGAACTCCTTGCTC 3790 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 ||| || ||||||||||| || || | || || | || |||||| ||||| || Sbjct 3789 CTAGCTCCGATGCCCACGGCCTCGACATCCCAAATATTAGGGTTCAACGAATGCTTTGAG 3730 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 | | || ||| | ||| || | || || | ||||| ||||||| | | ||| Sbjct 3729 GCCTACACGTCAAATATATATACAAGACGAGTGTTATCCGGCGAATTTCAAATTCTCAAT 3670 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA- 364925 | || || | |||||| | | | || |||||| || ||| |||| | Sbjct 3669 CAATATCTCTTTAAGGATTTGATAAATCTAGGTTTGTGGGATGCGTCTATG-CGAACCAG 3611 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 ||||| || ||||| || | ||| || || | |||| ||||| | | || Sbjct 3610 GATCATTGCAAACAATGGCTCAATTGCGAATATACCCGAGATTCCTGAAGACATAAGGCA 3551 Query 364986 TATTTACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATC 365044 |||| | ||||| ||||||||| | || || | ||||||||||||| | || | Sbjct 3550 CCTTTATAGGACCGTGTGGGAAATTCCACAAAAGAGC-ATCATTGATATGGCCGTGGACC 3492 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT--CATGACTCAGCCAACCTC 365102 | || || |||||| || |||||||| | || |||| ||| | |||| || Sbjct 3491 GAGGCGCCTTTATCGACCAAAGCCAGTCTCTCAA--TATTCACATTGCCGAGCCTTCCAT 3434 Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | ||||| || || |||||||| ||| ||||||| || || ||||| || Sbjct 3433 CTCGAAGCTCACTTCTATGCATTTTTACTCGTGGAAAAAGGGGCTAAAGACCGG 3380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343380078584