Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq602 212 8e-50 seq113 123 3e-23 >seq602 Length=19998 Score = 212 bits (234), Expect = 8e-50 Identities = 405/593 (68%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||| |||||||||||||||||||| || | ||||||||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| || || |||||||| | |||||| |||| ||||| || || |||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGT- 32837 || || || ||||| ||||| |||| ||||||| | | ||| ||| || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014 Query 32838 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| || |||||| | ||| || |||| | | ||| || || || || | Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074 Query 32896 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATATGTATCAATCAAAAGACTA 32951 | | | | |||| | | || ||| || |||||| ||||||| ||| | Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| || ||||| || ||||| || ||||| || ||||| ||| | | |||||| Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | || || || || || ||| || | ||||||||||||| || ||||| || | Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 ||||||||||| ||||| || || ||||||| ||| | | || | Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCC 7310 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 |||| | | ||| || || | ||||| ||||| || ||||| || || || | | | Sbjct 7311 CAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGAC 7370 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 |||||||| | | |||||| || | ||||| ||||||||||| || ||||| Sbjct 7371 TTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 123 bits (136), Expect = 3e-23 Identities = 1143/1840 (62%), Gaps = 46/1840 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 || |||| ||||| | | ||| || || || || ||||| ||||| || || ||||| Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT--AACTCGGATCTGCT 61966 || |||| ||||||||||||| || || || || || || || || || Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 61967 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62026 || || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 62027 ATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62086 || || ||||||||||||||||||| | || |||||| || | || ||||| ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 62087 A---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCT-ATTC---TTGATCTC 62139 | | | ||||| ||| || ||| | ||| || ||||| ||| | || | | Sbjct 3569 ATCTCGGGTATATTCGCAATTGAGCCATTGTTTGCAATGATCCTGGTTCGCATAGA-CGC 3627 Query 62140 ATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAA 62199 ||| ||| || | | | ||| | ||| ||||| |||| | | |||||| Sbjct 3628 ATC---CCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTGAGAATTTGAAA 3684 Query 62200 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATT 62259 ||| || || || |||| | || || ||||| || || | || | | || || Sbjct 3685 TTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCAAAGCATTCGTT 3744 Query 62260 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 62319 || || ||||| | || || || || ||||| || || | | || || || Sbjct 3745 GAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTTCCT 3804 Query 62320 AAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCC--AAAGATCCGACGGT 62377 || || || | | || | || | ||||||| || |||||| || || Sbjct 3805 AACGCCATACTTGGCAACCTTCGCACGAAGGGAATCCCAATCCCATAAAGAT--GATGGC 3862 Query 62378 ACAACNNNNNNNNNNNNNNNTTGTAGAATACCGT---TACTGGCGTACGATCCTACATAT 62434 ||||| ||| | || || | | ||| | ||| || Sbjct 3863 ACAACATTCCACATGTCGAATTGAAAGATGCCCTGAGAAATGGGG---CTTCCCTGGTAA 3919 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 | ||||||| || | || ||| || ||||| | ||| | ||| | | || Sbjct 3920 GACTCGTATGTACCAGTTTGCTGAGCCAGCTCACACGACTGCTCAAGAGCAGCATGGTAT 3979 Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTT 62554 || || || || ||||| | || | ||| ||||| |||| ||||| || || Sbjct 3980 ATTGTCTCAAATATCTTTATGTTCAATTCTCGCGCTGGAGGGCTGTCAAAAGGCATTTTG 4039 Query 62555 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 | | | |||| ||||| | ||||| || ||||| || || |||||||||||| || Sbjct 4040 CATCGTAAGAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATA 4099 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || || ||| || | |||||| | || | ||| ||||| ||||| |||||| Sbjct 4100 TTTGATCGCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTT 4159 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TATT 62731 | | |||||| | |||| | || | ||||||||| ||| || | | Sbjct 4160 TTTGTTACCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTG 4219 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA--TTAGCATCCG 62789 | |||||| | ||||| || || || |||||||||| |||||| || || | Sbjct 4220 ATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGAT--G 4277 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 || || || || || || || | || | |||||||| || | |||| ||||| Sbjct 4278 AGTACTGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGAT 4337 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 || |||| ||| || | ||| ||| | || ||| |||| || || ||||| | || | Sbjct 4338 TAGACTTTGCGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCG 4397 Query 62910 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTT 62966 || | ||| || | ||||| | | || || | || | | | ||| Sbjct 4398 CATCAAGAATGGCATACCAGAGCTTTTGGGCAGGGATCGT--TTTACGACCAAGACCTTT 4455 Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | || ||| | ||| || ||| ||||| ||||||| | | || || | Sbjct 4456 GGC-CTCATATGAAGCATATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTG 4514 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 || |||| ||||| | | | |||| || || | || |||||||||||| || | Sbjct 4515 GAGCGTCATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACA 4574 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 |||| || ||||| || || ||| ||||| ||| | | || || ||||| || Sbjct 4575 GATCGGGTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAAT 4634 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 | || || | ||| | ||| | | || ||||| ||||| || ||||| || || || | Sbjct 4635 TTTTCTTTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAA 4694 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | ||||| ||||| || || || ||||| | |||| || || | ||||| || | Sbjct 4695 AGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACAC 4754 Query 63267 TCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCTGAGATATAGCTTCCACTG 63325 | ||| || | ||||| || || ||| ||| || || | ||||| ||| | Sbjct 4755 GAAGCATGGGGACTATACCGTTTGA-GTAGCCACCTGTTCCAGCAATATAAGACCCAGAG 4813 Query 63326 GCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 || | |||||| || ||| ||||| | ||||| || || || ||||| || Sbjct 4814 GCTCTTATATTATGGATATGA-AGACCAACACCCCCGGCAGACTTGCTAATCAATGCACA 4872 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | ||| | || ||||| || || || ||| || |||| || | |||||| Sbjct 4873 TGTTTTCAGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACA 4932 Query 63445 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 | || | ||| | || || || |||||||| | ||| || || || || || || Sbjct 4933 GGATGAAAGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAA 4992 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63563 | | ||| | | ||| ||||| || || || ||||| | || || | |||| Sbjct 4993 CATCCGCTGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCG-TGAA 5051 Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 | || | || || | ||| | || | ||| || | || || | |||| | ||| Sbjct 5052 TGCCAAGCGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTTGCCCCTGATTC 5111 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663 ||| || || || || | |||||||| |||||||| Sbjct 5112 TCAGCAGATACGAACGCTCAAGGGTTTTAAATCCAAAATA 5151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627152715200