Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq612 138 1e-27 seq49 123 2e-23 >seq612 Length=74583 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || || || |||| || ||||||||||||| || Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||||| |||||| ||||| ||||| ||||| || ||||| Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| |||||||| | || |||| | || | ||||| || Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||| || || |||||||| ||| | ||||| | || | |||||| Sbjct 29727 TATTCAGAAGGAGTCCACGCTCCATCTTGTGCTTCGTCTTCGCGGAGGA 29775 >seq49 Length=10291 Score = 123 bits (136), Expect = 2e-23 Identities = 171/239 (72%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | || || ||| | ||||| | ||||| || || Sbjct 10180 ACCATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCT 10121 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || | |||||||||||| ||||||||||| || || |||||| Sbjct 10120 TCAGACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGAC 10061 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG----ATCGCACTGTGGGCGA 25171 || || || |||| ||||| || || || | || |||| | ||| || || | Sbjct 10060 CAGCAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTG----A 10005 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 || |||||||||||||| || || || ||| ||||||| || || |||||||| ||| Sbjct 10004 CTATAATATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGGATATT 9946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324767914780