Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq49 134 1e-26 seq612 122 7e-23 seq33 120 3e-22 >seq49 Length=10291 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || ||||| |||| || ||||| ||| | | Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || |||||||| |||||||| || || || || || || || Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||||||||| || || ||| | |||||| | || |||| || || || Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAAT 9998 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||| | ||| |||| || || |||| ||||| Sbjct 9997 ATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGG 9951 >seq612 Length=74583 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || || || | || || |||||||| | | Sbjct 29548 ATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTCG 29607 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||| ||||||||||| || ||||| || || || Sbjct 29608 GACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 29667 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||||||| | |||||| | || |||| ||||| || Sbjct 29668 CAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAAT 29727 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | ||| | || | || | |||||||| Sbjct 29728 ATTCAGAAGGAGTCCACGCTCCATCTTGTGCTTCGTCTTCGCGGAGG 29774 >seq33 Length=72831 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || ||||||||||| |||||||| || | || || || || ||||||| || || ||| Sbjct 31869 GTCAAGATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAA 31928 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || |||| || |||||||| |||||||| || || ||| Sbjct 31929 TCCAGTGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCC 31988 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || || || || |||||||| || ||| | |||||| || || | ||||| Sbjct 31989 GATCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTTCCGAC 32048 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || || | ||| | || | ||| | || || ||| Sbjct 32049 TACAATATCCAGAAGGAGTCTACTCTTCATCTTGTACTCCGACTCCGTGGTGGT 32102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724869353780