Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq444 105 1e-17 seq521 104 5e-17 seq598 91.5 3e-13 seq249 86.0 1e-11 seq294 84.2 4e-11 >seq444 Length=97904 Score = 105 bits (116), Expect = 1e-17 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||| Sbjct 25732 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAGC 25791 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 25792 CCCACGTTGGGC-GAAGT 25808 >seq521 Length=29782 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||| Sbjct 8864 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAGC 8805 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8804 CCCACGTTGGGC 8793 >seq598 Length=20540 Score = 91.5 bits (100), Expect = 3e-13 Identities = 193/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| || || | ||||||||||||||| | | | ||||| || ||| | Sbjct 18727 TCCATTCCAAGTGTAATTGATGGCCTCAAGCCAGGACTGAGGAAGATTCTTTTTTCTTGC 18668 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||||| || || |||||||| || || || || || |||| ||||| ||| Sbjct 18667 TTCAAGCGAAAGCTAAAGCAAGAAATCAAAGTTGCCCAATTAGCTGGCTATGTTAGCGAG 18608 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCA--GGGTGCCATTGTAGGCATGGCAC 218746 | | | || || ||||| ||| | ||| | | | ||||| | ||| |||| | Sbjct 18607 CATGCGGCTTATCACCACGGAGAG--GCATCTTTATGTGCTTCCATTATTGGCTTGGCCC 18550 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 | |||||| |||| || ||||| |||||| |||| || ||||||||| ||| Sbjct 18549 AAGACTATACGGGCTCAAATAACATTCCCTTGCTTGTCCCTTCTGGCCAGTTTGGTACTC 18490 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 | || || ||||||||| ||| ||| | | || |||||||| Sbjct 18489 GCCTTCAAGGAGGAAAGGATGCTGCCTCTCCTCGTTACATCTTTAC 18444 >seq249 Length=1445 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 864 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 923 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 924 CCCACGTTGGGC 935 >seq294 Length=1083 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||| || |||||||||||||||| ||||||||||| |||| |||||| | ||||| | Sbjct 888 GGTAAGTAAGCCCGGTTAGCTCAGCCGGTAGAGCGCGGGACTTTTAATCCTGAGGTCGAG 947 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 ||||| || ||| |||||||| Sbjct 948 GGTTCAAGTCCCTCATCGGGC 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027828740474692