Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq49 154 3e-32 seq612 152 9e-32 seq33 149 1e-30 seq598 111 3e-19 seq44 111 3e-19 seq444 95.1 2e-14 seq521 89.7 9e-13 >seq49 Length=10291 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 || ||| |||||| || || | || || | || || || ||||||||||| || |||| Sbjct 9943 TTCAATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTAT 10002 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || ||||| || || ||||| || | |||||| || || ||||| || | ||| |||| Sbjct 10003 AGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGT 10062 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || || ||||| |||||||| || ||| ||| || || |||||||||| | Sbjct 10063 CAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAG 10122 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| | ||||| ||||| || || || || |||||||| || ||||| Sbjct 10123 ATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq612 Length=74583 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||||||||| || | || | || ||||||||||| || || || |||||||| || Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 |||||| || ||||| || | ||| || || || || || || | || ||||| || || Sbjct 29715 GAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGG 29656 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||||||||| || || ||| || ||| |||||||| | || || || Sbjct 29655 AATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCAC 29596 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || ||||| || ||||| || || ||||| || || |||||| Sbjct 29595 TTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq33 Length=72831 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||| | || || || ||||| || ||||| || || ||||| Sbjct 32101 CCACCACGGAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 32042 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | |||||| ||||| || || || | || || ||||| || Sbjct 32041 AGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGG 31982 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| |||||||| ||| |||||||| |||||||| Sbjct 31981 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACC 31922 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || |||||||| || || || ||||| Sbjct 31921 TCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCAT 31875 >seq598 Length=20540 Score = 111 bits (122), Expect = 3e-19 Identities = 195/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 176241 GTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGT 176300 || ||||| || | || ||| ||| ||||| ||||| |||||||| | ||| || || Sbjct 18444 GTAAAGATGTAACGAGGAGAGGCAGCATCCTTTCCTCCTTGAAGGCGAGTACCAAACTGG 18503 Query 176301 CCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACT 176360 || ||| | |||||| |||||||| || ||| ||||||||||||| || | Sbjct 18504 CCAGAAGGGACAAGCAAGGGAATGTTATTTGAGCCCGTATAGTCTTGGGCCAAGCCAATA 18563 Query 176361 ATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCG 176420 |||| | | ||| ||||| ||||||||||| | || | ||| || || || Sbjct 18564 ATGGAAGCACATAAAGATGCCTCTCCGTGGTGATAAGCCGCATGCTCGCTAACATAGCCA 18623 Query 176421 GCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATC 176480 || || || || |||||||||||||| || || ||||| || || || |||||| Sbjct 18624 GCTAATTGGGCAACTTTGATTTCTTGCTTTAGCTTTCGCTTGAAGCAAGAAAAAAGAATC 18683 Query 176481 TTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGA 176524 |||| | | ||||| || ||||| | || |||||||| Sbjct 18684 TTCCTCAGTCCTGGCTTGAGGCCATCAATTACACTTGGAATGGA 18727 >seq44 Length=71667 Score = 111 bits (122), Expect = 3e-19 Identities = 235/351 (67%), Gaps = 25/351 (7%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 ||||| ||||||||||| | ||| |||||||| || || | ||||||||| || || ||| Sbjct 901 GGGCTTTCGTGGTTGAACAAGATTCCGTTGCAAGCAAAAAGGCCATATGCTTCCCGATAG 842 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 || || |||| || | | | ||||||||| | || || ||||| |||| || Sbjct 841 TTTTTCACTATCCAATAAGAGTAGAGCTTTGCAACACCATATGGTGAACGGGGATAAAAT 782 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGC- 268581 ||||| || ||||| || | ||| ||||| ||||| |||||||||||||| || Sbjct 781 GGCGTTGTTTCGTTTTGCGGAACCTCTGTTACTTTTCCAAAAAGCTCGGAGGTCGAGGCC 722 Query 268582 ---------TTGG-TA--GA--ACTTTGTTG----------TTTTTTCGAGACCGCAGAT 268617 |||| || || || | || | | | | |||||||| || Sbjct 721 TGAAGCTTATTGGCTAATGAATACCTGGTAGAAACGGACACTATCGACAAGACCGCATAT 662 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 || ||||| || | | |||||| ||||| ||| |||| || | | | |||||||| | Sbjct 661 TCTTATTGCTTCCAAAATACGAAGGGTTCCAATGGCATCAACTTGCCCAGTATACTCTGC 602 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTC 268728 ||| || || || ||| |||||| || || | ||||| || | ||| Sbjct 601 CATGTCAAAAGATACCATCACATGGGATTGAGCCGCAAGGTTGTATATCTC 551 >seq444 Length=97904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 ||||||||| |||||||||||| ||||||| || ||||||| || | ||||||||||||| Sbjct 25729 AGCGCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCG 25788 Query 84513 AGCCCCACATCGGGC 84527 |||||||| | |||| Sbjct 25789 AGCCCCACGTTGGGC 25803 >seq521 Length=29782 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||||| || ||||||| || | |||||||||||||||| Sbjct 8864 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAGC 8805 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 8804 CCCACGTTGGGC 8793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921615349588640