Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq49 129 1e-24 seq612 118 3e-21 >seq49 Length=10291 Score = 129 bits (142), Expect = 1e-24 Identities = 175/241 (73%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 288234 GATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGAT 288293 |||||| || ||| || || ||||| || || ||||| | || |||||||| || Sbjct 9941 GATTCA---ATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAAT 9997 Query 288294 ATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTG 288353 ||||||||| | |||||| | ||| || || | || ||||| || || || || || || Sbjct 9998 ATTATAGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTG 10057 Query 288354 TTGAGAATCTGGGATTCCTTCTTTATCCTGGA-TTTTCGCTTTCACGTTTTCTATAGAAT 288412 || | || ||||||||||| || |||| |||| ||||| || ||||| || | | Sbjct 10058 CTGGTCAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTT-ACATTTTCAATGGTGT 10116 Query 288413 CGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 | ||||| ||||| |||||||| || ||||| || || || |||||||| || |||| Sbjct 10117 CTGAAGATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCA 10176 Query 288473 T 288473 | Sbjct 10177 T 10177 >seq612 Length=74583 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | ||| || ||||| | |||| || || || |||||||| || | Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | ||| || || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 29715 GAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGG---TCTGG 29659 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| || || ||||||||| ||||| || || || | || || || Sbjct 29658 AGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTC 29599 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || ||||| || || || || ||||| || || |||||| Sbjct 29598 CACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645150034936