Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq49 129 1e-24
seq612 118 3e-21
>seq49
Length=10291
Score = 129 bits (142), Expect = 1e-24
Identities = 175/241 (73%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 288234 GATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGAT 288293
|||||| || ||| || || ||||| || || ||||| | || |||||||| ||
Sbjct 9941 GATTCA---ATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAAT 9997
Query 288294 ATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTG 288353
||||||||| | |||||| | ||| || || | || ||||| || || || || || ||
Sbjct 9998 ATTATAGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTG 10057
Query 288354 TTGAGAATCTGGGATTCCTTCTTTATCCTGGA-TTTTCGCTTTCACGTTTTCTATAGAAT 288412
|| | || ||||||||||| || |||| |||| ||||| || ||||| || | |
Sbjct 10058 CTGGTCAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTT-ACATTTTCAATGGTGT 10116
Query 288413 CGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472
| ||||| ||||| |||||||| || ||||| || || || |||||||| || ||||
Sbjct 10117 CTGAAGATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCA 10176
Query 288473 T 288473
|
Sbjct 10177 T 10177
>seq612
Length=74583
Score = 118 bits (130), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||| ||||| || | ||| || ||||| | |||| || || || |||||||| || |
Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
||| || | ||| || || | ||||| ||||| || ||||| ||||| || |||||
Sbjct 29715 GAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGG---TCTGG 29659
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|||||||| || || ||||||||| ||||| || || || | || || ||
Sbjct 29658 AGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTC 29599
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||||||||| || ||||| || || || || ||||| || || ||||||
Sbjct 29598 CACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179645150034936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |