Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq113 224 1e-53 seq122 86.0 7e-12 >seq113 Length=5777 Score = 224 bits (248), Expect = 1e-53 Identities = 676/1037 (65%), Gaps = 10/1037 (1%) Strand=Plus/Plus Query 114286 ATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGC 114345 ||| || ||||||||||| || | ||||| || | |||||||||||| || | ||| Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGC 4113 Query 114346 GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 114405 ||| || ||||| || || |||||||| |||| |||||||| || || || || Sbjct 4114 CTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTT 4173 Query 114406 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 114465 | | | ||| ||| | || |||||||| | ||| ||| |||| | || | || Sbjct 4174 GGCAACATAATGTAGCATATCAAAATCAAAAGACCC-GTCGCTT--TTGATAAACATCGG 4230 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 ||| || || || || || ||||| || || |||||| || | ||||| || || Sbjct 4231 AAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGATGAT 4290 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 ||| |||||||| ||||| || || ||||| |||| ||| |||||||| ||||||| ||| Sbjct 4291 TTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTT 4350 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 || | ||| || | |||||||||||||| || || ||| ||| | | ||||| || Sbjct 4351 GCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGC 4410 Query 114646 CTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 114705 | ||||| | ||| || | || | | || | |||| || | Sbjct 4411 ATACCAGAGCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGC 4470 Query 114706 GTAGAGGGCTTCAAACTC--TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 114763 || | |||||||||| || || || | || || | ||||| || | || ||| Sbjct 4471 ATATAACTCTTCAAACTCCGGTCCCCAACAG--TCGGACAAACCTGGAGCGTCATTTGGA 4528 Query 114764 CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAG 114823 ||||| |||| ||| ||| | | ||| || || |||||||| || || || ||||| Sbjct 4529 CAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCAT 4588 Query 114824 AGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 114883 || || | || ||||||| || ||| | || || | || ||| || ||| Sbjct 4589 AGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCC 4648 Query 114884 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA 114943 || || || | | ||| |||||||| || |||| || | || | | || || Sbjct 4649 AAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGT 4708 Query 114944 CGA--CCAGCC-TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATG 115000 | || ||| || | ||||| | || || ||| | || |||||||| || | Sbjct 4709 TTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACT 4768 Query 115001 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGG 115060 ||||| | || | |||| ||| || |||| |||| | |||||| | || |||| Sbjct 4769 ATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGG 4828 Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120 || || | ||||| |||||| || |||| || || || | || || | Sbjct 4829 ATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCA 4888 Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180 || || ||| |||||| || | | |||| || | || ||| || | || ||| Sbjct 4889 TATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGC 4948 Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 115240 | |||||||| || || || |||||||| | || ||| ||||||| | || |||||| Sbjct 4949 CGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATC 5008 Query 115241 TTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 115300 || || || || | | | | | | |||||| |||||||| || | || || | | Sbjct 5009 AAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCAACTCTC 5068 Query 115301 ATAAACATGTATTGGGG 115317 || | || || ||||| Sbjct 5069 ATGATCAGATACTGGGG 5085 >seq122 Length=58243 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 11026 || || || ||||| || || || ||||| ||| ||| || || ||||||| | | Sbjct 23020 GCATCGATCTCATCAATAAACACAATACAAGGTGCTATTTTTCGCGCTTCTTCAAATAGA 23079 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACAT 11086 || ||||| | ||||||||||| ||||||||||||||||| | ||| | ||| || Sbjct 23080 TCACGGACACGAGAAGCACCGACACCAACAAACATTTCCACAAATTCGGCCCCCGAA-AT 23138 Query 11087 TGGATG-AAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 11145 | | | || || || | || || || || || || |||||| |||||||| || || Sbjct 23139 GGAAAGAAATGGAACCTCGGCCTCCCCGGCCATCGCCTTGGCGAGAAGGGTCTTTCCGGT 23198 Query 11146 CCCAGG 11151 ||||| Sbjct 23199 TCCAGG 23204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349030244960