Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq612 109 6e-19
seq33 104 3e-17
seq49 95.1 1e-14
seq180 93.3 5e-14
seq221 86.0 7e-12
>seq612
Length=74583
Score = 109 bits (120), Expect = 6e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | | ||| | ||| | ||| | ||| |||||| |||||||| |||||||
Sbjct 29774 CCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAG 29715
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || | | || || ||||| || || || || || || ||||||||||| | ||
Sbjct 29714 AGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGA 29655
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | |||||||| |||||| || || | || | | ||||| || |||||
Sbjct 29654 ATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACT 29595
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|||| ||| ||||| |||||||| || || || ||||| |||||||||
Sbjct 29594 TCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
>seq33
Length=72831
Score = 104 bits (114), Expect = 3e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || |||||||| || | || || || | || || |||||||| || || ||
Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135
|| || |||||||| |||| || | | |||||| || ||| | || | ||||
Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCT-TGAATCTTGGCCTTGACAT 31948
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | ||||| || ||||| || |||| |||||||| || || || || ||||| |
Sbjct 31947 TCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAA 31888
Query 42196 CAAAGATTTGCATTTTCAC 42214
||||||||||||| || ||
Sbjct 31887 CAAAGATTTGCATCTTGAC 31869
>seq49
Length=10291
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| ||||||||||| || |||| || || | | || || |||||||| ||||| ||
Sbjct 9986 CTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAA 10045
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||| || || |||||||| | || | | || ||||| ||||||||| || | |
Sbjct 10046 TATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATT 10105
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| ||||| || || | |||||| ||||| || || || || || ||
Sbjct 10106 TTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGAC 10165
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 10166 GAAGATTTGCAT 10177
>seq180
Length=2461
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 348 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 289
Query 57065 TATACTACCGAGGA 57078
||||||||||||||
Sbjct 288 TATACTACCGAGGA 275
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 1365 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 1306
Query 57065 TATACTACCGAGGA 57078
||||||||||||||
Sbjct 1305 TATACTACCGAGGA 1292
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 2382 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 2323
Query 57065 TATACTACCGAGGA 57078
||||||||||||||
Sbjct 2322 TATACTACCGAGGA 2309
>seq221
Length=44452
Score = 86.0 bits (94), Expect = 7e-12
Identities = 81/101 (80%), Gaps = 8/101 (8%)
Strand=Plus/Minus
Query 56983 AAATTAACGTTTATG----AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCC 57038
|||| || ||||||| ||||| | || |||||| | |||||||||| |||| |||
Sbjct 31124 AAATGAATGTTTATGGAATAAAAACTCTC-CCTCGG---GGAATCGAACCCCGGTCACCC 31069
Query 57039 GCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079
|||||||||||||| ||||| |||||||||||| || |||
Sbjct 31068 GCGTGACAGGCGGATATACTAACCACTATACTAAGGAAGAT 31028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543208644422080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |