Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq612 109 6e-19 seq33 104 3e-17 seq49 95.1 1e-14 seq180 93.3 5e-14 seq221 86.0 7e-12 >seq612 Length=74583 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||| | ||| | ||| |||||| |||||||| ||||||| Sbjct 29774 CCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAG 29715 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | | || || ||||| || || || || || || ||||||||||| | || Sbjct 29714 AGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGA 29655 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| |||||| || || | || | | ||||| || ||||| Sbjct 29654 ATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACT 29595 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| ||| ||||| |||||||| || || || ||||| ||||||||| Sbjct 29594 TCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq33 Length=72831 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | || || || | || || |||||||| || || || Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 || || |||||||| |||| || | | |||||| || ||| | || | |||| Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCT-TGAATCTTGGCCTTGACAT 31948 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||||| || ||||| || |||| |||||||| || || || || ||||| | Sbjct 31947 TCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAA 31888 Query 42196 CAAAGATTTGCATTTTCAC 42214 ||||||||||||| || || Sbjct 31887 CAAAGATTTGCATCTTGAC 31869 >seq49 Length=10291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||||||||| || |||| || || | | || || |||||||| ||||| || Sbjct 9986 CTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAA 10045 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| || || |||||||| | || | | || ||||| ||||||||| || | | Sbjct 10046 TATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATT 10105 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | |||||| ||||| || || || || || || Sbjct 10106 TTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGAC 10165 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 10166 GAAGATTTGCAT 10177 >seq180 Length=2461 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 348 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 289 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 288 TATACTACCGAGGA 275 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1365 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 1306 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 1305 TATACTACCGAGGA 1292 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 2382 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 2323 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 2322 TATACTACCGAGGA 2309 >seq221 Length=44452 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/101 (80%), Gaps = 8/101 (8%) Strand=Plus/Minus Query 56983 AAATTAACGTTTATG----AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCC 57038 |||| || ||||||| ||||| | || |||||| | |||||||||| |||| ||| Sbjct 31124 AAATGAATGTTTATGGAATAAAAACTCTC-CCTCGG---GGAATCGAACCCCGGTCACCC 31069 Query 57039 GCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||||||| ||||| |||||||||||| || ||| Sbjct 31068 GCGTGACAGGCGGATATACTAACCACTATACTAAGGAAGAT 31028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208644422080