Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq612 127 2e-24 seq49 100 3e-16 >seq612 Length=74583 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||| ||||| | || | ||| | ||| | ||| ||||| || |||||||| ||||| Sbjct 29777 GCTCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCA 29718 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || | ||| || |||||||| || || | |||| |||||||| || ||| Sbjct 29717 GAGAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGA 29658 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || |||||||| |||||||||||| | | || | |||||||| | ||| Sbjct 29657 GGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCC 29598 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| || | || ||||| || || ||||| |||||||| ||||| Sbjct 29597 ACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCAT 29548 >seq49 Length=10291 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || || ||| | ||| | || ||||||||||||||||| || || Sbjct 9950 TCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGA 10009 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | ||| || ||||| |||||||| | || | || ||||| || || || Sbjct 10010 GAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGG 10069 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||| || || ||||| |||||| ||||| | | ||| | |||||| | | || || Sbjct 10070 TATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAAC 10129 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||| | || | ||||| || || || ||||| || || || ||||||| Sbjct 10130 TTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCATGG 10179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497162418880