Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq113 224 1e-53 >seq113 Length=5777 Score = 224 bits (248), Expect = 1e-53 Identities = 658/1007 (65%), Gaps = 10/1007 (1%) Strand=Plus/Plus Query 116247 ATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGC 116306 ||| || ||||||||||| || | ||||| || | |||||||||||| || | ||| Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGC 4113 Query 116307 GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 116366 ||| || ||||| || || |||||||| |||| |||||||| || || || || Sbjct 4114 CTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTT 4173 Query 116367 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 116426 | | | ||| ||| | || |||||||| | ||| ||| |||| | || | || Sbjct 4174 GGCAACATAATGTAGCATATCAAAATCAAAA-GACCCGTCGCTT--TTGATAAACATCGG 4230 Query 116427 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 116486 ||| || || || || || ||||| || || |||||| || | ||||| || || Sbjct 4231 AAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGATGAT 4290 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 ||| |||||||| ||||| || || ||||| |||| ||| |||||||| ||||||| ||| Sbjct 4291 TTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTT 4350 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 || | ||| || ||||||| |||||||| || || ||| ||| | | ||||| || Sbjct 4351 GCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGC 4410 Query 116607 CTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 116666 | ||| | | ||| || | || | | || | |||| || | Sbjct 4411 ATACCAGAGCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGC 4470 Query 116667 GTAGAGGGCCTCAAACTC--TTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGA 116724 || | | |||||||| || || |||| || || | ||||| || | || |||| Sbjct 4471 ATATAACTCTTCAAACTCCGGTCCCCAACAG--TCGGACAAACCTGGAGCGTCATTTGGA 4528 Query 116725 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 116784 ||||| |||| ||| ||| | | ||| || || |||||||| || || || ||||| Sbjct 4529 CAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCAT 4588 Query 116785 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 116844 || || | || ||||||| || ||| | || || | || ||| || ||| Sbjct 4589 AGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCC 4648 Query 116845 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA 116904 || || || | | ||| |||||||| || |||| || | || | | || || Sbjct 4649 AAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGT 4708 Query 116905 CGA--CCAGCC-TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 | || ||| || | ||||| | || || |||| | || |||||||| || | Sbjct 4709 TTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACT 4768 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 ||||| | || | |||| ||| || |||| |||| |||||| | || ||| Sbjct 4769 ATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGG 4828 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 || || | ||||| |||||| || |||| || ||| || | || || | Sbjct 4829 ATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCA 4888 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 || || || |||||| || | | |||| || | || ||| || | || ||| Sbjct 4889 TATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGC 4948 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 117201 | |||||||| || || || |||||||| | || ||| ||||||| | || |||||| Sbjct 4949 CGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATC 5008 Query 117202 TTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACC 117248 || || || || | | ||||| | |||||| |||||||| || Sbjct 5009 AAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCC 5055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502506669920