Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq33 136 4e-27 seq612 109 6e-19 seq49 95.1 1e-14 >seq33 Length=72831 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||||||||||||||| || || || | || || Sbjct 32083 ACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCA 32024 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| ||||| || |||| ||||||||| |||| || | | |||||| || Sbjct 32023 AGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGA 31964 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||||| || ||||| || || | |||||||| || Sbjct 31963 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTT 31904 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || || || ||||||||||||||||| ||| Sbjct 31903 CCTGTAAGGGTCTTAACAAAGATTTGCATCTTG 31871 >seq612 Length=74583 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||| ||||| | || |||||| || ||||| || || || Sbjct 29774 CCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAG 29715 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || ||||| ||||| || || |||| |||||||||||| | || Sbjct 29714 AGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGA 29655 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||| |||| ||| | || | | ||||| || ||||| Sbjct 29654 ATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACT 29595 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||| ||||| |||||||| || ||||| ||||| ||||||||| Sbjct 29594 TCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq49 Length=10291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | | || ||| ||||| | || ||| ||||| ||||| ||||| || Sbjct 9951 CCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAG 10010 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || |||||||| || || ||||| | ||| |||||||| | ||| Sbjct 10011 AGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGT 10070 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| ||| || | ||| | | | | ||||| ||||| || Sbjct 10071 ATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACT 10130 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||| ||||| || || || ||||| || ||||||||||| Sbjct 10131 TCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234075926240