Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq602 212 6e-50 seq612 107 2e-18 >seq602 Length=19998 Score = 212 bits (234), Expect = 6e-50 Identities = 418/616 (68%), Gaps = 2/616 (0%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 |||||||| ||| ||| | |||||||| || || || |||||| ||||| | Sbjct 6837 CAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGC 6896 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG-AAAAGAA 133013 || ||||| || ||||| ||||| | |||||| ||||| || |||| |||| ||||||| Sbjct 6897 CCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGC-AAACGACCCGGAAAAGAA 6955 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | |||||| || || || || || ||||| | || || | ||| ||| | || Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTGGATTTGC 7015 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| || ||||||| ||| |||| || | || || || |||||||||||| Sbjct 7016 AATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTT 7075 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACAT 133193 ||||| || ||| | | || | || ||||| || || |||||||| Sbjct 7076 GAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACAT 7135 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 || || || | || ||||| |||||| || ||||||||| | || ||||| | Sbjct 7136 CTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGAT 7195 Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 ||||| || ||| || || | || | |||||| || || || || ||| ||| || Sbjct 7196 TTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGC 7255 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC 133373 |||||||||| ||||| ||| |||||||| || ||| |||| | |||| | Sbjct 7256 AAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATG 7315 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 | ||||| |||||||||||||| ||||| ||||| || || || | | ||||| Sbjct 7316 GGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTT 7375 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || | | ||| || ||| ||||| || ||||||||||| || | | || || || Sbjct 7376 ATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAGGATTATC 7435 Query 133494 GCGCAACAGCGGCTCC 133509 | ||||| || ||| Sbjct 7436 TCTCAACAAAGGTTCC 7451 >seq612 Length=74583 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || |||||||| ||||| || |||| || ||| | | Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||||||| ||||| || |||||||| | ||||| Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||||||||| || || | | || ||| || || || Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| | ||||| ||| | ||||| ||| Sbjct 29727 TATTCAGAAGGAGTCCACGCTCCATCTTGTGCTTCGT 29763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168973678080