Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq602 212 6e-50
seq612 107 2e-18
>seq602
Length=19998
Score = 212 bits (234), Expect = 6e-50
Identities = 418/616 (68%), Gaps = 2/616 (0%)
Strand=Plus/Plus
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
|||||||| ||| ||| | |||||||| || || || |||||| ||||| |
Sbjct 6837 CAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGC 6896
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG-AAAAGAA 133013
|| ||||| || ||||| ||||| | |||||| ||||| || |||| |||| |||||||
Sbjct 6897 CCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGC-AAACGACCCGGAAAAGAA 6955
Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073
| |||||| || || || || || ||||| | || || | ||| ||| | ||
Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTGGATTTGC 7015
Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133
|||||| || ||||||| ||| |||| || | || || || ||||||||||||
Sbjct 7016 AATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTT 7075
Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACAT 133193
||||| || ||| | | || | || ||||| || || ||||||||
Sbjct 7076 GAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACAT 7135
Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253
|| || || | || ||||| |||||| || ||||||||| | || ||||| |
Sbjct 7136 CTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGAT 7195
Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313
||||| || ||| || || | || | |||||| || || || || ||| ||| ||
Sbjct 7196 TTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGC 7255
Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC 133373
|||||||||| ||||| ||| |||||||| || ||| |||| | |||| |
Sbjct 7256 AAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATG 7315
Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433
| ||||| |||||||||||||| ||||| ||||| || || || | | |||||
Sbjct 7316 GGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTT 7375
Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|| | | ||| || ||| ||||| || ||||||||||| || | | || || ||
Sbjct 7376 ATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAGGATTATC 7435
Query 133494 GCGCAACAGCGGCTCC 133509
| ||||| || |||
Sbjct 7436 TCTCAACAAAGGTTCC 7451
>seq612
Length=74583
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| || || ||||| || |||||||| ||||| || |||| || ||| | |
Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | ||||||| ||||| || |||||||| | |||||
Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| || ||||||||||| || || | | || ||| || || ||
Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| || ||||| | ||||| ||| | ||||| |||
Sbjct 29727 TATTCAGAAGGAGTCCACGCTCCATCTTGTGCTTCGT 29763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500168973678080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |