Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq366 168 3e-36 seq49 145 3e-29 seq612 140 1e-27 seq594 136 2e-26 seq587 109 2e-18 seq33 87.8 7e-12 >seq366 Length=38039 Score = 168 bits (186), Expect = 3e-36 Identities = 259/367 (71%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||| |||| ||||| |||| || ||| | || | |||||||| || || || ||| | Sbjct 23101 TTTACTCCCGAAGAGCTTTCTTCCATGATCCTCATCAAAATGAAGGAGACTGCTGAAGCA 23042 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | ||| || | | || |||| || || || ||||| || |||||||| ||| | Sbjct 23041 TATCTCGGTACTACGATCACCAATGCTGTGATCACGGTTCCTGCCTATTTCAACGATTCT 22982 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || |||||||| || ||||| || |||||| ||| | ||||| || || || || Sbjct 22981 CAGCGCCAAGCAACCAAGGATGCCGGTGCTATTGCCGGTCTCAATGTGCTCCGCATCATC 22922 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA-Ga 451476 || || || || || || || | || ||||| || | ||| | || | ||| || Sbjct 22921 AACGAGCCCACCGCTGCAGCCATCGCTTATGGTCTCGATAAACAATCTGACA-AGACCGA 22863 Query 451477 aaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT 451536 | | | | | |||||||| ||||| || ||| |||| |||| | || || || Sbjct 22862 GCGTATTGTGCTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTTTCTTTGCTCTCCAT 22803 Query 451537 TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||| ||| || |||||||||||||||||| |||||| || ||||| ||||| ||||| Sbjct 22802 GGAAGGTGGTGTCTTTGAAGTAAAGGCAACCGCTGGTGACACGCATCTTGGAGGAGAAGA 22743 Query 451597 TATTGAT 451603 ||||| Sbjct 22742 CTTTGAT 22736 >seq49 Length=10291 Score = 145 bits (160), Expect = 3e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||| ||||| ||||| || || || || |||||||| || Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | | || |||||||| ||||| || |||||||| || ||||| || Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || || | || || || || || ||||||||||| | | || |||||| Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAAT 9998 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || |||| || || |||| | |||||| ||||| Sbjct 9997 ATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGA 9953 >seq612 Length=74583 Score = 140 bits (154), Expect = 1e-27 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || |||||||| || || || || ||||| || || || || || || Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || || ||||| ||||| ||||||||||||||||| || || Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | ||||| |||| ||||| ||||| ||||||||||| | | |||||||| Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 391229 TATTGATAAGGA 391240 |||| | ||||| Sbjct 29727 TATTCAGAAGGA 29738 >seq594 Length=21442 Score = 136 bits (150), Expect = 2e-26 Identities = 229/333 (69%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||| ||||| ||||||||||| || || || | | |||| || | ||| Sbjct 18546 AAGATGAAGGAAACTGCAGAACAATACATGGGAAAGCCCATAAAGAATGCCGTTGTGACT 18487 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || |||||||||||||| || || || || || ||||||||||| ||||||| Sbjct 18486 GTGCCTGCATATTTCAATGATGCCCAGCGCCAGGCCACAAAAGATGCAGGTACTATTGCT 18427 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || || |||| ||||| |||| ||||| ||||| || || ||||| || ||||| || Sbjct 18426 GGGTTGGATGTCCTTCGTGTTATCAATGAGCCTACGGCCGCAGCTCTTGCGTATGGTCTT 18367 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | | |||| | || | || || | ||| |||| || || || Sbjct 18366 G---------ACAAAACTGGCGACCGCACCATAGCTGTTTATGACCTTGGAGGCGGTACC 18316 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| | ||| | || ||| || |||| || || || |||||| | |||||||| Sbjct 18315 TTTGACATTTCCATTCTGGAAATACAAAATGGCGTTTTCGAGGTAAAGTCTACCAATGGA 18256 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| ||||| || ||||||||| | || ||| Sbjct 18255 GATACCCATCTTGGTGGTGAAGATTTCGACAAT 18223 >seq587 Length=23816 Score = 109 bits (120), Expect = 2e-18 Identities = 197/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| || || || ||||||| ||| || || |||||||||||||||||| Sbjct 20497 GCCGTCATTACGGTGCCTGCATATTTCACAGATAGTCAGCGTCAAGCAACTAAAGATGCA 20438 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| ||||| || || || || ||| || |||||||| || || || || || | Sbjct 20437 GGAGTCATTGCCGGCTTGAAGGTCGATCGCATCATTAATGAGCCCACGGCTGCCGCCATT 20378 Query 451442 GCATATGGACTAG---GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 || |||||||| | | |||||||| | ||| | | | ||||||| |||||| Sbjct 20377 GCCTATGGACTCGATCGCAAATCAAAGG----AGATG-----ACTGTTTTAGTTTTTGAT 20327 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 | || || || ||| || ||| | || | ||||| || || || ||||| || Sbjct 20326 CTCGGAGGCGGTACTTTCGACGTGTCTTTGCTCACCATTGATGAGGGTGTTTTTGAGGTT 20267 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || | ||||||| | ||||| ||||||||||| |||| || Sbjct 20266 CTCGCCATTGCTGGTGATCCACATCTTGGAGGTGAAGACTTTGACAA 20220 >seq33 Length=72831 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || || || || || || ||||| || || ||||| | Sbjct 31875 ATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCCAGT 31934 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || |||||||||||||| ||||| || || ||||| Sbjct 31935 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGATCAG 31994 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | ||||| | || || || ||||| |||||| | || | | || || ||| Sbjct 31995 CAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTTCCGACTACAAT 32054 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 32055 ATCCAGAAGGAGTCTACTCTTCA 32077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975702907898096