Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq366 316 2e-80 seq594 105 5e-17 seq598 87.8 1e-11 >seq366 Length=38039 Score = 316 bits (350), Expect = 2e-80 Identities = 969/1481 (65%), Gaps = 33/1481 (2%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 |||||| |||||| ||||| ||||| ||||| ||||| | || |||| || |||||| Sbjct 21960 TTATCAACGGCAGAGACATTGAGAATGCCATTAGCATCGATGTCGAATGAAACCTCAATT 22019 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || || || | | || ||||| || || ||||| | || | ||||| || | Sbjct 22020 TGGGGCACACCACGGGGGGCTGGTGGAATACCGTCCAACTCGAACTTGCCCAGCAAATGA 22079 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || ||||| || | | || || || || || | ||| ||| |||| | | ||| || Sbjct 22080 TTGTCTTTGGTCATGGTGCGCTCGCCTTCAAAGACTTGAATAAGAACTCCGGGTTGGTTG 22139 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || ||||| || | |||||| || |||||| |||||| |||||||| | | ||| Sbjct 22140 TCAGAATACGTGGAAAATACCTGGGCTTTTTTCGTAGGAATCGTTGTGTTGCGAGTGATA 22199 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | |||||| | ||| || || || || | ||| ||||| | |||| |||||| | Sbjct 22200 AGGGGGGTCATGACACCTCCGGCAGTCTCGATACCGAGAGACAAGGGAGCGACATCCAAA 22259 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || | |||| ||| ||||| | | | ||| ||| || | || || | || Sbjct 22260 AGCAAGATATCTTGGGTCTTTTCCGAAATATCGCCATTAAGGATGGAAGCCTGGACGGCT 22319 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| || |||||||| | | | || || | || ||||||||| Sbjct 22320 GCACCATAAGCAACAGCCTCGTCAGGATTGATGCTCTTGTTGAGCTCCTTTCCATTGAAA 22379 Query 517670 AAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | ||| | | || | | | ||||| || | || || || || | ||||| Sbjct 22380 AAGTCTTGCACCAGCTTCT-GGATTCTGGGAATGCGGGTGGAGCCACCGACAAGGACAAT 22438 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTT--GAATCCAATAAAACTTTTTCAACGGGTTCA 517786 ||| | ||| |||||| | | |||| |||||| | ||| ||||| ||||| ||| Sbjct 22439 TTCGTCAACC--TGATTTTTGGACTTTTGAGAATCCTTAAGAACCTTTTCCACGGGATCA 22496 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | | || | ||| ||||| || || || ||| | ||| | | | Sbjct 22497 AGCGTAGAGCGGAAGAGGTCCTGGCAAAGCTCCTCAAAGCGAGCACGAGTGATGGAGGTG 22556 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA--GTTTGAGTCGAAGAAG 517904 | ||||||| || || || | ||| || | ||||| | | | ||| | | || | Sbjct 22557 TAGAAATCAATGCCCTCAAATAGAGAGTCGATTTCAACGGAAGCGGTTGTGGCTGAGGAC 22616 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 517964 | ||| || |||||||| || || ||||| | || | || | ||| ||| | Sbjct 22617 AAGGTG--CGCTTAGCACGCTCGCAGGCTGTACGAAGACGGCGGATGGCACGTGCGTTTC 22674 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 | | ||| |||| | || | |||||| || || ||| | ||| | || | | Sbjct 22675 CAGAGATGTCTTTTTTGTGCTTGCGCTTGAATTCCTCGACAAA--ATGGCTAACCATTCT 22732 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||| ||||| ||||| | | || | || | || || |||||| || | Sbjct 22733 GGAATCAAAGTCTTCTCCTCCAAGATGCGTGTCACCAGCGGTTGCCTTTACTTCAAAGAC 22792 Query 518083 TCCATCTTCAA--GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 ||| |||| | |||| ||||| |||||| || |||||||||| |||||| || Sbjct 22793 ACCACCTTCCATGGAGAGCAAAGA--AACATCAAAAGTACCACCACCCAAATCAAAGATC 22850 Query 518141 AGTACATTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || ||| | || ||||| | |||||| |||||||| || | || ||||| Sbjct 22851 AGCACAATACGCTCGGTCTTGTCAGATTGTTTATCGAGACCATAAGCGATGGCTGCAGCG 22910 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || || || || || || | | ||||| ||||| ||||| || ||||| || || Sbjct 22911 GTGGGCTCGTTGATGATGCGGAGCACATTGAGACCGGCAATAGCACCGGCATCCTTGGTT 22970 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 ||||| | || |||||||| ||||| |||||||| || || || |||| || | || Sbjct 22971 GCTTGGCGCTGAGAATCGTTGAAATAGGCAGGAACCGTGATCACAGCATTGGTGA--TCG 23028 Query 518318 T--TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 518375 | |||| | ||| || || || | |||||||| | | ||||| || |||| | Sbjct 23029 TAGTACCGAGATATGCTTCAGCAGTCTCCTTCATTTTGATGAGGATCATGGAAGAAAGCT 23088 Query 518376 GTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTA 518434 ||| || | | | | ||| ||| | |||| || || || | || || | Sbjct 23089 CTTCGGGAGTAAACTCCTTCTTTTCGCTCTTGA-ATTCAACGCTAATCTTGGGCTTGGTG 23147 Query 518435 CCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTA 518494 ||| || || || |||||||| | |||||||| || || ||| || | || | | Sbjct 23148 TTGGCATCAACGACCTTGAATGGCCAATGCTTCATATCAGACTGGACAATTGGATCGTCA 23207 Query 518495 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT 518554 ||| | ||||| | || || || || || | ||||| ||| || || ||||| Sbjct 23208 AAACGACGGCCAATCAGACGCTTAGCGTCGAAGACTGTATTTTCTGGGTTCATGGCAGCC 23267 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| |||||| ||||||| || ||| | || || ||||| |||| ||||| || ||| Sbjct 23268 TGATTTTTGGCACCATCTCCGATAAGACGCTCAGTGTCTGTGAATGCGACATAGGAGGGA 23327 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTA---CCATTTTGCCATACA 518671 ||||| | || || |||||||| ||||| || || || | | ||| | | ||| Sbjct 23328 GTTGTCCTGTTTCCCTGATCATTTGCAATGATCTCGACGTGATCTCCAATAAG---GACA 23384 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || || | || ||||| ||||||||||||||||| Sbjct 23385 CCAACGCAGGAGTAGGTGGTTCCCAAATCAATACCAATAGC 23425 >seq594 Length=21442 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 |||| |||||||||||||||| ||| || || || || ||||| |||| | | |||| Sbjct 18360 TTTTGTCAAGACCATACGCAAGAGCTGCGGCCGTAGGCTCATTGATAACACGAAGGACAT 18419 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | |||||||| | ||||||||||| ||||| || | || | ||| || ||||||| Sbjct 18420 CCAACCCAGCAATAGTACCTGCATCTTTTGTGGCCTGGCGCTGGGCATCATTGAAATATG 18479 Query 518286 CAGGAACAGTAATAACGGCAT 518306 |||| ||||| | |||||||| Sbjct 18480 CAGGCACAGTCACAACGGCAT 18500 >seq598 Length=20540 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 |||||||| || |||||||| || |||||||| || || | | || | ||||| || Sbjct 19593 AAATGTACTCTCATTTTGACTGAAGGAGATTCTGCAAAGGCCCTGGCAGTTTCTGGCCTC 19534 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 || ||||||| ||||||| |||||||| || ||| | || |||||||||||||| Sbjct 19533 TCCGTAGTTGGAAGGGATTATTTTGGAGTTTATCCGCTTCGTGGGAAACTTTTGAATGTG 19474 Query 635558 AGGGATGC 635565 | ||||| Sbjct 19473 CGCGATGC 19466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780792030544072