Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq113 187 3e-42 seq602 91.5 2e-13 seq122 84.2 3e-11 >seq113 Length=5777 Score = 187 bits (206), Expect = 3e-42 Identities = 669/1039 (64%), Gaps = 14/1039 (1%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||| || ||||| | || ||| | || || || || ||||| | || |||| Sbjct 5085 CCCCAGTATCTGATCATGAGAGTTGCGCTTGGCATTCACGGTGAAGACGTCGACTCTGCC 5026 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || || | |||||| | | ||||||| ||| || | |||||||| || Sbjct 5025 ATCGAAACGTATAATTTGATGTCTCAGCGGATGTTCACCCATGCCTCCCCAACCCTTTTT 4966 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || || |||||||| | ||||| | || ||||| | ||||||| | || ||| Sbjct 4965 AATGCCGGTACACCGCGGCCCCAGCTTTCATCCTGTTTTTTGATTGCAATGACTGACGAT 4906 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || |||| || || || | ||| || | |||||| || |||| || || Sbjct 4905 TCGATCACCGGAATATATGACACCCTGAAAACATGTGCATTGATTAGCAAGTCTGCCGGG 4846 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 ||| | || | || |||||| || | |||||| |||| |||| || ||| | Sbjct 4845 GGTGTTGGTCTTCATATCCATAATATAAGAGCCTCTGGGTCTTATATTGCTGGAACAGGT 4786 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || | ||| | ||||| | || |||||||| || | |||| || || || ||||| Sbjct 4785 GGCTACTCAAACGGTATAGTCCCCATGCTTCGTGTCTATAACATGACTGCACGATATGTC 4726 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 | |||| ||| | || || | | ||| | ||| | ||||| |||||||| Sbjct 4725 GATCAAGGCGGGAATAAACGACCTGGCGCCTTTGCAATTTATTTGGAGCCCTGGCACGCT 4666 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| | | || ||| | || || || || | || |||| |||||| | Sbjct 4665 GATGTTTTCGATTTCTTGGATTTAAAGAAAAATTTTGGAAAAGACGAGGGTCGGTGCAGG 4606 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 ||||| || | || || ||||| || ||||| |||||||| |||| ||| | ||| Sbjct 4605 GATCTTTTTTATGCCCTATGGATACCCGATCTGTTCATGAAACGAGTGGAGCAAGATGGG 4546 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA--GG 112206 | ||| |||| || |||||| | | || || ||| | ||||| | || || || || Sbjct 4545 ATGTGGACTCTTTTCTGTCCAAATGACGCTCCAGGTTTGTCCGA--CTGTTGGGGACCGG 4488 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC--GGGCGACTGCGACGGTGCC 112264 ||||||||| | || | || |||| || ||| || || | ||| | || Sbjct 4487 AGTTTGAAGAGTTATATGCTTCATATGAGGCCAAAGGTCTTGGTCG--TAAAACGATCCC 4430 Query 112265 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324 || | | ||| | || ||||| | | ||| || || || || ||||| || Sbjct 4429 TGCCCAAAAGCTCTGGTATGCCATTCTTGATGCGCAAGTGGAAACCGGAACGCCATACAT 4370 Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384 ||| | ||||| | || ||| |||| ||||||||| || |||| ||||| || Sbjct 4369 GCTCTTTAAAGATTCTTGCAACGCAAAGTCTAATCAAAAAAACCTGGGGACCATCAAAAG 4310 Query 112385 TTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 112444 || ||| | |||||||||||| | | | || ||||||||| | || ||||| Sbjct 4309 CTCAAACTTGTGTACAGAAATCATCCAGTACTCATCAAAAGATGAGGTTTCCGTTTGTAA 4250 Query 112445 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 112504 |||||| || || || || || | || | | | || ||| | | ||||||| ||| Sbjct 4249 CCTCGCTTCCATTGCACTTCCGATGTTTATCAA--AAGCGAC-GGGTCTTTTGATTTTGA 4193 Query 112505 AAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAA 112564 | || || | ||| | ||| || |||||||| || || | |||| ||| || Sbjct 4192 TATGCTACATTATGTTGCCAAAGTGGTAACAAAAAATCTTAATAATATTATCGATGTCAA 4133 Query 112565 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 112624 || || || || ||| ||| | ||| ||||||||||| | || ||||| | || Sbjct 4132 CTTCTATCCTGTCGAGGAGGCTAGGCGATCAAATATGAGACATAGACCGATTGGAATTGG 4073 Query 112625 TGTCCAAGGTCTCGCGGAT 112643 ||||||||||| || ||| Sbjct 4072 CGTCCAAGGTCTTGCAGAT 4054 >seq602 Length=19998 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAAAGTCGCGTTCCTTT 102176 ||| |||| ||||| | |||||| |||| ||| ||| || || | | | ||||| Sbjct 7051 ATTGAAAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAAATCCAGATGCCC---CCTTT 6995 Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 | || |||| | |||||||| |||||||| || ||||| || || || || ||| Sbjct 6994 TCGCAGAGACTGGTTGCATTTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTT-TGC 6936 Query 102237 -GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCT 102295 || || | |||| | || ||||| ||||| ||||| || || || ||||||||||| Sbjct 6935 AGCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCTTACTTTTTCCAACGAGCT 6876 Query 102296 TATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| | | |||||||| || || |||||||| Sbjct 6875 GATCAGTAGAGACGAGGGTCTACATACCGAGTTTGC 6840 >seq122 Length=58243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 16057 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGAC 16114 |||| | ||||| ||||||||||| || || || || ||| | ||||||| || | Sbjct 23012 TTCCAATTGCATCGATCTCATCAATAAACACAATACAAGGTGCTATTTTTCGC--GCTTC 23069 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 |||||| ||||| || ||||| || || |||||||||||||| |||||||| | || Sbjct 23070 TTCAAATAGATCACGGACACGAGAAGCACCGACACCAACAAACATTTCCACAAATTCGGC 23129 Query 16175 GGCGGAACATTGGATG-AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | ||| || | | | || || || | | || || || || || ||||||||| | Sbjct 23130 CCCCGAA-ATGGAAAGAAATGGAACCTCGGCCTCCCCGGCCATCGCCTTGGCGAGAAGGG 23188 Query 16234 TCTTACCCGTACCTGG 16249 |||| || || || || Sbjct 23189 TCTTTCCGGTTCCAGG 23204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737651320640