Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq113 185 1e-41
seq222 89.7 6e-13
seq598 87.8 2e-12
>seq113
Length=5777
Score = 185 bits (204), Expect = 1e-41
Identities = 667/1036 (64%), Gaps = 8/1036 (1%)
Strand=Plus/Plus
Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162
||| || ||||| || || || | ||||| || | ||| |||| || || || | |||
Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGC 4113
Query 110163 AGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222
|| || || || |||||| ||||| | ||| ||||| || || || ||
Sbjct 4114 CTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTT 4173
Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGG 110282
| | | ||| || | || |||| || | |||| | || ||| | | | ||
Sbjct 4174 GGCAACATAATGTAGCATATCAAAATCAAAAGACC-CGTCGCTTT--TGATAAACATCGG 4230
Query 110283 GAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAAT 110342
|| ||||| || || || || || || ||| ||| ||||| | ||| | | ||
Sbjct 4231 AAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGATGAT 4290
Query 110343 TTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTT 110402
||| ||||||||||| || || || ||| |||| ||| || ||||| || || | |||
Sbjct 4291 TTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTT 4350
Query 110403 GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462
||| | ||| ||| ||||||||||||| || || |||||| || | | ||||||||
Sbjct 4351 GCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGC 4410
Query 110463 CTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGT 110522
| ||| | | ||| |||| ||| | | ||||||| |||| || |
Sbjct 4411 ATACCAGAGCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGC 4470
Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTTCGCCTTGTCGGGAC 110581
|| || || ||||| ||| |||| | ||| || || | ||| || | | ||||
Sbjct 4471 ATATAACTCTTCAAACTCCGGTCCCCA-ACAGTCGGACAAACCTGGAGCGTCATTTGGAC 4529
Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641
|||| || | ||| | ||| | | ||| || | ||||||||||| || || ||||| |
Sbjct 4530 AGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCATA 4589
Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701
|| | ||||| || | ||| ||| |||| || | || || || ||||
Sbjct 4590 GGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCCA 4649
Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGAC 110761
| || || | | ||| | |||||| || || | ||| | || | || || ||
Sbjct 4650 AGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGTT 4709
Query 110762 GA--CCCGCC-TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAA 110818
| |||||| || | ||||| ||||| || || |||| | ||||| || | |
Sbjct 4710 TATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACTA 4769
Query 110819 TTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGA 110878
| || | || | ||| ||| || ||| ||| | ||| | || | ||||
Sbjct 4770 TACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGGA 4829
Query 110879 TATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCAT 110938
|||| | ||||| ||| || || |||| ||||| |||||| | | || || |||
Sbjct 4830 TATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCAT 4889
Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998
| || || |||||||| | | | ||||| | ||| || || || | ||| || |
Sbjct 4890 ATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGCC 4949
Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCT 111058
| || || || ||||| || || || || | ||||| |||||| | || ||||||
Sbjct 4950 GCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATCA 5009
Query 111059 TGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCA 111118
|| || || |||| || ||| || |||| ||||||||| |||| ||||||| ||
Sbjct 5010 AATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCAACTCTCA 5069
Query 111119 TGAACATATATTGAGG 111134
||| || ||| || ||
Sbjct 5070 TGATCAGATACTGGGG 5085
>seq222
Length=104519
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||||||||||||||||||| |||||||||||| | | ||||||| ||| |
Sbjct 32919 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGCCGCTGGTTCGACCCCAGC 32860
Query 136776 TGGGAACAGCTTTT 136789
||||| || ||||
Sbjct 32859 TGGGAGCAATTTTT 32846
>seq598
Length=20540
Score = 87.8 bits (96), Expect = 2e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||||||||||||||||||| |||||||||||| | | ||||||| ||| |
Sbjct 2624 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGCCGCTGGTTCGACCCCAGC 2683
Query 136776 TGGGAACA 136783
||||| ||
Sbjct 2684 TGGGAGCA 2691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971494333600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |