Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq113 237 2e-57
>seq113
Length=5777
Score = 237 bits (262), Expect = 2e-57
Identities = 684/1043 (66%), Gaps = 22/1043 (2%)
Strand=Plus/Plus
Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 106338
||| || |||||||| || || | ||||| ||||| |||| |||||| || ||||
Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGA---TCGCCT 4110
Query 106339 AGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 106395
|| ||| || ||||| || || || || | || |||||||| || || |
Sbjct 4111 AGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCAC 4170
Query 106396 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 106455
|| | | | ||| || | ||| ||||||||| | ||| ||| |||| | || |
Sbjct 4171 TTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCC-GTCGCTT--TTGATAAACAT 4227
Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515
||||| || || || || | || ||||| | |||||| || || ||||| |
Sbjct 4228 CGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGAT 4287
Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575
||||||||||||||||| || || || || ||||||| || ||||| ||| ||||
Sbjct 4288 GATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGC 4347
Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635
|||||| | ||| || |||||||||| ||||| || || ||| || | | |||||
Sbjct 4348 GTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAAT 4407
Query 106636 TGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTG-GCCC--GTCCCTCCGCCTCGTA 106692
|| | ||| | | ||| || | | | || | || | || | ||||| ||
Sbjct 4408 GGCATACCAGAGCTTTTGGGCAGGGA---TCGTTTTACGACCAAGACCTTTGGCCTCATA 4464
Query 106693 CTTTGTGTAGAGGGCTTCAAACTCC--TCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750
| || | ||||||||||| || || || |||||| | |||||| || |
Sbjct 4465 TGAAGCATATAACTCTTCAAACTCCGGTCCCCAAC--AGTCGGACAAACCTGGAGCGTCA 4522
Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810
| |||||||||||||| ||| ||| | | ||| || || |||||||| || || ||
Sbjct 4523 TTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGT 4582
Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870
||||| |||| |||| ||||| || |||||| |||| || | || || |
Sbjct 4583 ATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTT 4642
Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930
|| || | ||| || | | ||| |||||||| ||||| | ||| | ||| | | ||
Sbjct 4643 AAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCA 4702
Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987
||| | ||| |||||| ||||| || || || |||| | || ||||||||
Sbjct 4703 GGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATG 4762
Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047
|| | ||||| | ||| | ||| ||| || |||| ||| | |||||| | |
Sbjct 4763 GGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATA 4822
Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107
| |||||| || | |||| |||||| || |||| || ||||| | ||
Sbjct 4823 TTATGGATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGG 4882
Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167
|| |||| || ||| |||| || || || | | || || | || || || | |
Sbjct 4883 GTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGC 4942
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || | |||||||| ||||| || |||||||| | || || ||||||| | ||
Sbjct 4943 TGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGA 5002
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| | || || || | | |||| || | |||||| ||||| ||||| | ||
Sbjct 5003 GACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCA 5062
Query 107288 ACACGCATAAACATGTATTGGGG 107310
|| | ||| | || || |||||
Sbjct 5063 ACTCTCATGATCAGATACTGGGG 5085
Score = 84.2 bits (92), Expect = 3e-11
Identities = 163/238 (68%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 105583 CTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCAT 105642
||| | ||| ||||| ||||| |||||||| || || | |||||||| ||| | ||||||
Sbjct 3358 CTTTGTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTAAAAATGCAT 3417
Query 105643 AGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTC 105702
||||| |||||| || || | || | ||| || ||| | | || || |||||
Sbjct 3418 AGAAGTGAGCTTCGAGATGGAAGGCTCGGCAATGTGAATATTGAGAGACTGGCTTTGGTC 3477
Query 105703 AATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG-ATTTCCCACA 105761
|| ||| || || | | ||||||||||||| ||| | | | ||||||||||
Sbjct 3478 GATAAAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTT-TTGTGGAATTTCCCACA 3536
Query 105762 CTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC 105819
| || | || || | | | || || || || || || | ||||| |||||| ||
Sbjct 3537 CGGTCCTATAAAGGTGCCTTATGTCTTCAGGAATCTCGGGTATATTCGCAATTGAGCC 3594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589976286646880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |