Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq113 237 2e-57 >seq113 Length=5777 Score = 237 bits (262), Expect = 2e-57 Identities = 684/1043 (66%), Gaps = 22/1043 (2%) Strand=Plus/Plus Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 106338 ||| || |||||||| || || | ||||| ||||| |||| |||||| || |||| Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGA---TCGCCT 4110 Query 106339 AGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 106395 || ||| || ||||| || || || || | || |||||||| || || | Sbjct 4111 AGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCAC 4170 Query 106396 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 106455 || | | | ||| || | ||| ||||||||| | ||| ||| |||| | || | Sbjct 4171 TTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCC-GTCGCTT--TTGATAAACAT 4227 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||||| || || || || | || ||||| | |||||| || || ||||| | Sbjct 4228 CGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGAT 4287 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 ||||||||||||||||| || || || || ||||||| || ||||| ||| |||| Sbjct 4288 GATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGC 4347 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 |||||| | ||| || |||||||||| ||||| || || ||| || | | ||||| Sbjct 4348 GTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAAT 4407 Query 106636 TGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTG-GCCC--GTCCCTCCGCCTCGTA 106692 || | ||| | | ||| || | | | || | || | || | ||||| || Sbjct 4408 GGCATACCAGAGCTTTTGGGCAGGGA---TCGTTTTACGACCAAGACCTTTGGCCTCATA 4464 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCC--TCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750 | || | ||||||||||| || || || |||||| | |||||| || | Sbjct 4465 TGAAGCATATAACTCTTCAAACTCCGGTCCCCAAC--AGTCGGACAAACCTGGAGCGTCA 4522 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | |||||||||||||| ||| ||| | | ||| || || |||||||| || || || Sbjct 4523 TTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGT 4582 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 ||||| |||| |||| ||||| || |||||| |||| || | || || | Sbjct 4583 ATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTT 4642 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 || || | ||| || | | ||| |||||||| ||||| | ||| | ||| | | || Sbjct 4643 AAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCA 4702 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 ||| | ||| |||||| ||||| || || || |||| | || |||||||| Sbjct 4703 GGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATG 4762 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 || | ||||| | ||| | ||| ||| || |||| ||| | |||||| | | Sbjct 4763 GGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATA 4822 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | |||||| || | |||| |||||| || |||| || ||||| | || Sbjct 4823 TTATGGATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGG 4882 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || |||| || ||| |||| || || || | | || || | || || || | | Sbjct 4883 GTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGC 4942 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || | |||||||| ||||| || |||||||| | || || ||||||| | || Sbjct 4943 TGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGA 5002 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | || || || | | |||| || | |||||| ||||| ||||| | || Sbjct 5003 GACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCA 5062 Query 107288 ACACGCATAAACATGTATTGGGG 107310 || | ||| | || || ||||| Sbjct 5063 ACTCTCATGATCAGATACTGGGG 5085 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 105583 CTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCAT 105642 ||| | ||| ||||| ||||| |||||||| || || | |||||||| ||| | |||||| Sbjct 3358 CTTTGTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTAAAAATGCAT 3417 Query 105643 AGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTC 105702 ||||| |||||| || || | || | ||| || ||| | | || || ||||| Sbjct 3418 AGAAGTGAGCTTCGAGATGGAAGGCTCGGCAATGTGAATATTGAGAGACTGGCTTTGGTC 3477 Query 105703 AATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG-ATTTCCCACA 105761 || ||| || || | | ||||||||||||| ||| | | | |||||||||| Sbjct 3478 GATAAAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTT-TTGTGGAATTTCCCACA 3536 Query 105762 CTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC 105819 | || | || || | | | || || || || || || | ||||| |||||| || Sbjct 3537 CGGTCCTATAAAGGTGCCTTATGTCTTCAGGAATCTCGGGTATATTCGCAATTGAGCC 3594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976286646880