Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq612 185 2e-41 seq49 178 3e-39 seq33 131 4e-25 >seq612 Length=74583 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || |||||||| ||||| | || ||||| ||||| || Sbjct 29756 ACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCA 29697 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| || || || || || |||||||||||||| ||||| |||||||| Sbjct 29696 AGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 29637 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| || |||||||||||||||||| |||||||| || |||| ||||| Sbjct 29636 ATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTG 29577 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||||| || || | ||||||| Sbjct 29576 CCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq49 Length=10291 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || || || || || ||||||||||||||||| || || | || ||||| Sbjct 9960 AGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTT 10019 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || |||||||| || || || ||||| ||||| ||||| || || || |||||| Sbjct 10020 CCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCT 10079 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| ||||||||||| || || ||||||||||| ||| ||| ||||| || || Sbjct 10080 TTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTG 10139 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| ||||| | |||||| Sbjct 10140 ATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq33 Length=72831 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| ||||| || || |||||||| |||| ||| || | ||||| || Sbjct 32083 ACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCA 32024 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || || || || || || || || || || || |||||| Sbjct 32023 AGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGA 31964 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| ||| || || || || | ||| Sbjct 31963 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGATTCTACCTCGAGAGTGATGGTC 31907 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| | || || || || | |||||| Sbjct 31906 TTTCCTGTAAGGGTCTTAACAAAGATTTGCAT 31875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472900277404