Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq612 185 2e-41
seq49 178 3e-39
seq33 131 4e-25
>seq612
Length=74583
Score = 185 bits (204), Expect = 2e-41
Identities = 167/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || |||||||| ||||| | || ||||| ||||| ||
Sbjct 29756 ACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCA 29697
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || ||||| || || || || || |||||||||||||| ||||| ||||||||
Sbjct 29696 AGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 29637
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||||| || |||||||||||||||||| |||||||| || |||| |||||
Sbjct 29636 ATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTG 29577
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | ||||| || || | |||||||
Sbjct 29576 CCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
>seq49
Length=10291
Score = 178 bits (196), Expect = 3e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||||| || || || || || ||||||||||||||||| || || | || |||||
Sbjct 9960 AGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTT 10019
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| || |||||||| || || || ||||| ||||| ||||| || || || ||||||
Sbjct 10020 CCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCT 10079
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|||||||| ||||||||||| || || ||||||||||| ||| ||| ||||| || ||
Sbjct 10080 TTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTG 10139
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | ||||| ||||| | ||||||
Sbjct 10140 ATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq33
Length=72831
Score = 131 bits (144), Expect = 4e-25
Identities = 157/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| |||||||| ||||| || || |||||||| |||| ||| || | ||||| ||
Sbjct 32083 ACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCA 32024
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || || || || || || || || || || || ||||||
Sbjct 32023 AGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGA 31964
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| |||||||||||||| ||| ||| || || || || | |||
Sbjct 31963 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGATTCTACCTCGAGAGTGATGGTC 31907
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||||| | || || || || | ||||||
Sbjct 31906 TTTCCTGTAAGGGTCTTAACAAAGATTTGCAT 31875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109472900277404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |