Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq33 105 4e-18
seq49 93.3 3e-14
>seq33
Length=72831
Score = 105 bits (116), Expect = 4e-18
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||| ||||| | ||| |||| || ||||| |||||||||||
Sbjct 32065 TCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAAA 32006
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | |||||||| || |||||| ||||| ||
Sbjct 32005 ATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGAC--AT 31948
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| || || || |||| || ||||| ||||| || || ||||| |
Sbjct 31947 TCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAA 31888
Query 34969 CAAAGATCTGCATATT 34984
||||||| ||||| ||
Sbjct 31887 CAAAGATTTGCATCTT 31872
>seq49
Length=10291
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
||||| ||||| |||||||| || || ||| | |||| |||||||| ||||| ||||||
Sbjct 9987 TCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAT 10046
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || ||||||||||| |||| | || || ||||| || || || || || |
Sbjct 10047 ATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTT 10106
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||||| || | || || ||||| || || || || || ||
Sbjct 10107 TCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACG 10166
Query 34971 AAGATCTGCAT 34981
||||| |||||
Sbjct 10167 AAGATTTGCAT 10177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324631178639136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |