Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq33 105 4e-18 seq49 93.3 3e-14 >seq33 Length=72831 Score = 105 bits (116), Expect = 4e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| ||||| | ||| |||| || ||||| ||||||||||| Sbjct 32065 TCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAAA 32006 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | |||||||| || |||||| ||||| || Sbjct 32005 ATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGAC--AT 31948 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || || || |||| || ||||| ||||| || || ||||| | Sbjct 31947 TCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAA 31888 Query 34969 CAAAGATCTGCATATT 34984 ||||||| ||||| || Sbjct 31887 CAAAGATTTGCATCTT 31872 >seq49 Length=10291 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| ||||| |||||||| || || ||| | |||| |||||||| ||||| |||||| Sbjct 9987 TCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAT 10046 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || || ||||| || || || || || | Sbjct 10047 ATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTT 10106 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || | || || ||||| || || || || || || Sbjct 10107 TCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACG 10166 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 10167 AAGATTTGCAT 10177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631178639136