Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq602 185 1e-41 seq113 131 2e-25 >seq602 Length=19998 Score = 185 bits (204), Expect = 1e-41 Identities = 571/880 (65%), Gaps = 4/880 (0%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||||| ||||| | |||||||| || || ||||||| | || || | Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||| || |||| |||||||| | |||| || || | | | || Sbjct 6606 TCCATGAAATCAAACGGGTTTTCGACATTATACAGTTTTGACAAACCAAGTGAGAGCAGA 6665 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||||||| || || || ||||| ||||| | ||||||| || |||| Sbjct 6666 AGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTAGG 6725 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | || || || | ||| | ||| ||||| ||| | || ||||| ||||| Sbjct 6726 TCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAATG 6785 Query 18910 G-ATACA-ACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | ||| | | || | || | || | | || || | | | ||| |||| Sbjct 6786 GCATATATAATCG--CCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCAA 6843 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || |||||| |||||||||||||| |||| || || ||||| || | ||||||| Sbjct 6844 ACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGCA 6903 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 |||| || | ||||||| ||| || || | ||||| || || ||||||||||| || | Sbjct 6904 TCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCCT 6963 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| ||||| ||||| ||||| | | | ||||| ||| |||||| | Sbjct 6964 CAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTGGATTTGCAATCCAGT 7023 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 ||| ||||| | || || |||| | | || || || || | || || | | Sbjct 7024 TCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAATT 7083 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | |||||| | ||| || ||||| || |||| | ||||| || |||| Sbjct 7084 TTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACATCTCAGAAT 7143 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | |||||||| || || || || |||||||| | | || |||| || || || | Sbjct 7144 GGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGATTTGCACCT 7203 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | ||| ||| | | || ||||||||||| || |||||||| ||||||||||| | Sbjct 7204 CCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGCAAAAAAGG 7263 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | || || || |||||||| ||| | | | | ||||| | | || Sbjct 7264 CCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATGGGTTAGAT 7323 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | || || | || || ||||| || ||||| || ||||| | | |||||||| | Sbjct 7324 CCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTTATAAAAAA 7383 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 ||| || || ||||| || ||||| || || ||||| Sbjct 7384 GCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 131 bits (144), Expect = 2e-25 Identities = 991/1596 (62%), Gaps = 56/1596 (4%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || || ||||| ||||| | | | || | |||||||| | ||||||||| || ||| Sbjct 3326 TCGACGGTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTC 3385 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 |||| || |||| || ||||||||| ||| | || || ||| || Sbjct 3386 TTTAGCCCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAAGGCTCG 3445 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | ||| |||||||| ||||| || || || || ||||| || |||| || | |||||| Sbjct 3446 GCAATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATA 3505 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 || | || | ||||||| || ||||| || || |||||| || | |||||||| Sbjct 3506 TCAATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCA 3565 Query 47217 GGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgtttttta---at 47270 || | | | |||| ||| || || |||| | || || || || | | Sbjct 3566 GGAATCTCGGGTATATTCGCAATTGAGCCATTGTTTGCAATGATCCTGGTTCGCATAGAC 3625 Query 47271 tcatttgaccaa---agttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 ||| || || || ||| ||| ||| || || |||| |||| | |||| Sbjct 3626 GCATCCCACAAACCTAGATTTA--TCA---AATCCTTA-AAGAGATATTGATTGAGAATT 3679 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| || |||| |||| | |||||||||| || || | || | || Sbjct 3680 TGAAATTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCAAAGCAT 3739 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || || || || ||||| | || || || || ||||| | || | | ||| Sbjct 3740 TCGTTGAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAG 3799 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || || || ||||| || | || | ||||||||| | | |||| Sbjct 3800 TTCCTAACGCCATACTTGGCAACCTTCGCACGAAGGGAATCCCAATCCCATAAAGATGAT 3859 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 || ||||||||||| | || |||||| || || | | || || || | || Sbjct 3860 GGCACAACATTCCACATGTCGAATTGAAAGATGCCCTGAGAAATGGGGCTTCCCTGGTAA 3919 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACA--ACTTGCTTCCAATGCACTATAAT 47625 | | || | ||| | | | ||| || ||||| ||| ||| | | ||| || | Sbjct 3920 GACTCGTATGTACCAGTTTGCTGAGCCAGCTCACACGACT-GCT-CAAGAGCAGCATGGT 3977 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTC-CTTGCTTCTGATGATTCAAAAGGATAN 47684 ||||||| |||||||| |||||||| | |||| | ||| | |||||||| Sbjct 3978 ATATTGTCTCAAATATCTTTATGTTCA-ATTCTCGCGCTGGAGGGCTGTCAAAAGGCATT 4036 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 || |||||||| | ||||| || ||||| ||||| |||||||| | Sbjct 4037 TTGCATCGTAAGAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTC 4096 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 |||| || | ||| || | ||||| ||| | ||| ||||| ||||| ||| Sbjct 4097 ATATTTGATCGCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGA 4156 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CTTGTTATTT 47861 ||| | || ||| ||||||||| | || || Sbjct 4157 TTTTTTGTTACCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCCGTCGCTT 4216 Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGAT 47919 | | |||| | |||||| || || || || ||||| || | ||||||| || ||| Sbjct 4217 TTGATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGAT 4276 Query 47920 TAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGAT 47979 |||| || || ||||| | ||| | || | |||||| || |||| |||| | Sbjct 4277 GAGTAC--TGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTT 4334 Query 47980 GATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 ||||| ||| || | || || | ||||| | || ||||| ||||| | | Sbjct 4335 GATTAGACTTTGCGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTT 4394 Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTAT 48099 | | |||| || | | ||| | |||| ||| | | |||| | Sbjct 4395 GCGCATCAAGAATGGCATACCAGAG---------CTTTTGGGCAGGGATCGTTTTACGAC 4445 Query 48100 CATGT---------TCGTATTTAGTATATAACTTCTCAAATTCA--TCCCCATACACATT 48148 || | || ||| || |||||||| ||||| || |||||| ||| Sbjct 4446 CAAGACCTTTGGCCTCATATGAAGCATATAACTCTTCAAACTCCGGTCCCCA-ACAGTCG 4504 Query 48149 ATCTAACCCAGGACATTCATTAGGACACATCAATGACCA-ATCCTCATCATTTTTTACTC 48207 | |||| ||| ||||| ||||| | | | ||| |||| |||| | | |||| Sbjct 4505 GACAAACCT-GGAGCGTCATTTGGACAGAAAAGAGTCCACATCC-CATCTTGCTCCACTC 4562 Query 48208 TAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCT 48266 |||| || | ||| |||||||| || || ||||| || |||||| | || Sbjct 4563 GTTTCATGAACAGATCGGGTATCCATAGGGC-ATAAAAAAGATCCCTGCACCGACCCTCG 4621 Query 48267 TCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTC 48325 || || ||| ||| | ||||| | ||||||| || | | |||||| ||||| || || Sbjct 4622 TCTTTTCCAAAATTTTTCTTTAAATCCAAGAAA-TCGAAAACATCAGCGTGCCAGGGCTC 4680 Query 48326 TAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGT 48385 ||||| ||||| | | || ||||||||||| || |||||||| | ||||| ||||| Sbjct 4681 CAAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGT 4740 Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 ||||||| || | | ||| ||||| ||||| ||||| ||| ||||| | ||| Sbjct 4741 CATGTTATAGACACGAAGCATGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAAT 4800 Query 48446 ATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGA 48505 |||| ||| |||||||||||| || || ||| | ||| || || || Sbjct 4801 ATAAGACCCAGAGGCTCTTATATTATGGATATGAAGACCAACACCCCCGGCAGACTTGCT 4860 Query 48506 TATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 || | ||||| ||| ||||| ||||| ||||| Sbjct 4861 AATCAATGCACATGTTTTCAGGGTGTCATATATTCC 4896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104499867680