Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq366 183 2e-40 seq612 140 3e-27 seq49 136 3e-26 seq33 123 2e-22 >seq366 Length=38039 Score = 183 bits (202), Expect = 2e-40 Identities = 429/639 (67%), Gaps = 10/639 (2%) Strand=Plus/Minus Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024 ||||| | || || |||||||||| ||||||| | || | || | | || | Sbjct 22593 TTGAAATCGACTCTCTATTTGAGGGCATTGATTTCTACACCTCCATCACTCGTGCTCGCT 22534 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT-TTA 552083 |||| || |||| || ||||| | || |||| || || ||| | ||| ||| Sbjct 22533 TTGAGGAGCTTTGCCAGGACCTCTTCCGCTCTACGCTTGATCCCGTGGAAAAGGTTCTTA 22474 Query 552084 AGAGATTC--AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTA 552141 || ||||| ||| | | ||||| | || | |||||||| ||||| ||||| || | Sbjct 22473 AG-GATTCTCAAAAGTCCAAAAATC--AGGTTGACGAAATTGTCCTTGTCGGTGGCTCCA 22417 Query 552142 CAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAA 552199 | | ||||| | ||| | | || | ||| ||| ||||||||| || | | || Sbjct 22416 CCCGCATTCCCAGAATCCAGAAGCTGGTGCAAGA-CTT-TTTCAATGGAAAGGAGCTCAA 22359 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | || | ||||| || ||||||||||| |||||||| || | || || | || || Sbjct 22358 CAAGAGCATCAATCCTGACGAGGCTGTTGCTTATGGTGCAGCCGTCCAGGCTTCCATCCT 22299 Query 552260 TTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319 | ||| | | | ||||| ||| |||| | ||| | ||||| |||| | || Sbjct 22298 TAATGGCGATATTTCGGAAAAGACCCAAGATATCTTGCTTTTGGATGTCGCTCCCTTGTC 22239 Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 ||| ||| | || || | |||||| | ||||| |||||| | | || || || || Sbjct 22238 TCTCGGTATCGAGACTGCCGGAGGTGTCATGACCCCCCTTATCACTCGCAACACAACGAT 22179 Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 |||| |||||| | | |||||||| |||||||| || || ||| | | ||| || Sbjct 22178 TCCTACGAAAAAAGCCCAGGTATTTTCCACGTATTCTGACAACCAACCCGGAGTTCTTAT 22119 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAA 552499 |||| | |||||||| || | | | || ||||| ||| || || || | || | Sbjct 22118 TCAAGTCTTTGAAGGCGAGCGCACCATGACCAAAGACAATCATTTGCTGGGCAAGTTCGA 22059 Query 552500 TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATAT 552559 || || |||||||| || || || ||||| || || |||||||| ||| | ||||| || Sbjct 22058 GTTGGACGGTATTCCACCAGCCCCCCGTGGTGTGCCCCAAATTGAGGTTTCATTCGACAT 21999 Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| ||||| ||| | ||||| |||| |||||| Sbjct 21998 CGATGCTAATGGCATTCTCAATGTCTCTGCCGTTGATAA 21960 Score = 154 bits (170), Expect = 1e-31 Identities = 402/605 (66%), Gaps = 20/605 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGG---T 550048 ||||| ||||| ||||| |||||||| || || |||||||| | | ||| | Sbjct 23425 GCTATTGGTATTGATTTGGGAACCACCTACTCCTGCGTTGGTGTC---CTTATTGGAGAT 23369 Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 | || || || ||||| |||||||| || ||||| || ||||| || ||||| | ||| Sbjct 23368 CACGTCGAGATCATTGCAAATGATCAGGGAAACAGGACAACTCCCTCCTATGTCGCATTC 23309 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || || ||||| | | | | || |||| || ||| |||| || | || || Sbjct 23308 ACAGACACTGAGCGTCTTATCGGAGATGGTGCCAAAAATCAGGCTGCCATGAACCCAGAA 23249 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 ||||| | || || ||||| ||| | ||||| | ||||| | ||| | | ||| ||| Sbjct 23248 AATACAGTCTTCGACGCTAAGCGTCTGATTGGCCGTCGTTTTGACGATCCAATTGTCCAG 23189 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | ||||||||||||||||| ||| | | ||| ||| || || | ||| Sbjct 23188 TCTGATATGAAGCATTGGCCATTCAAGGTCGTTGATGCCAACACCAAGCCCAAGATTAGC 23129 Query 550289 GCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | | ||| || || | || | ||| | || ||| | |||| || ||| | Sbjct 23128 GTTGAATTCAAGAGCGAAAAG--AAGGAGTTTACTCCCGAAGAGCTTTCTTCCATGATCC 23071 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGT-CAAGAAGTTACGGATGCAGTA 550405 | || |||||||| | || || || | | | ||| | | | | || |||| || Sbjct 23070 TCATCAAAATGAAGGAGACTGCTGAAGCATATCTCGGTACTACGA-TCACCAATGCTGTG 23012 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || ||||| || || || || || ||||| || || ||||| || | Sbjct 23011 ATCACGGTTCCTGCCTATTTCAACGATTCTCAGCGCCAAGCAACCAAGGATGCCGGTGCT 22952 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| || || ||||| || || || ||||| || || || ||||| || | || ||| Sbjct 22951 ATTGCCGGTCTCAATGTGCTCCGCATCATCAACGAGCCCACCGCTGCAGCCATCGCTTAT 22892 Query 550526 GGACTTGATAAACATAATGATCAA----GAACTTAATGTACTCATCTTTGATT---GTGG 550578 || || |||||||| ||| ||| || | || ||| || |||||||||| |||| Sbjct 22891 GGTCTCGATAAACAATCTGA-CAAGACCGAGCGTATTGTGCTGATCTTTGATTTGGGTGG 22833 Query 550579 AGGTA 550583 |||| Sbjct 22832 TGGTA 22828 >seq612 Length=74583 Score = 140 bits (154), Expect = 3e-27 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| || || || || |||||| ||||||| || |||||| Sbjct 29765 AGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTT 29706 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| ||||| || |||||||| || | ||||| || |||||||||||||| Sbjct 29705 CCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCC 29646 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || ||||| ||||| || || || |||||| || || | || | || |||||| || Sbjct 29645 TTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCG-AAGACTCCACTTCGAGCGT 29587 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || ||||| ||||| || ||||||||||| Sbjct 29586 AATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCAT 29548 >seq49 Length=10291 Score = 136 bits (150), Expect = 3e-26 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 || || ||||| ||||| ||| | |||| |||||| || |||| || |||||| || Sbjct 9966 AGCACTAGATGGAGGGTTGACTCTTTTTG--AATATTATAGTCAGAGAGCGTTCTTCCAT 10023 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | || || || ||||| ||||| ||||| | |||||| ||||| || ||||||||||| | Sbjct 10024 CCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGT 10083 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACA 563439 |||| |||||||| ||||| ||||| || || | || | | ||| || || | Sbjct 10084 CTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTG-AAGATTCAACTTCTAGCGTGATT 10142 Query 563440 GTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| |||||||| ||||| ||||| |||||||| Sbjct 10143 GTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq33 Length=72831 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||||||||||||||| ||| || || |||||||| || | || || | Sbjct 32093 GAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACG 32034 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | ||| ||||| || |||||||||||||| || | |||||||| || || ||||| || Sbjct 32033 TCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTC 31974 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||||||||| || || || |||||| || ||| || || | | ||||||| Sbjct 31973 CTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTG-GATTCTACCTCGAGAG 31915 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || ||||| || ||||| || |||||||| Sbjct 31914 TGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCAT 31875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029263634679880