Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq366 183 2e-40
seq612 140 3e-27
seq49 136 3e-26
seq33 123 2e-22
>seq366
Length=38039
Score = 183 bits (202), Expect = 2e-40
Identities = 429/639 (67%), Gaps = 10/639 (2%)
Strand=Plus/Minus
Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024
||||| | || || |||||||||| ||||||| | || | || | | || |
Sbjct 22593 TTGAAATCGACTCTCTATTTGAGGGCATTGATTTCTACACCTCCATCACTCGTGCTCGCT 22534
Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT-TTA 552083
|||| || |||| || ||||| | || |||| || || ||| | ||| |||
Sbjct 22533 TTGAGGAGCTTTGCCAGGACCTCTTCCGCTCTACGCTTGATCCCGTGGAAAAGGTTCTTA 22474
Query 552084 AGAGATTC--AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTA 552141
|| ||||| ||| | | ||||| | || | |||||||| ||||| ||||| || |
Sbjct 22473 AG-GATTCTCAAAAGTCCAAAAATC--AGGTTGACGAAATTGTCCTTGTCGGTGGCTCCA 22417
Query 552142 CAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAA 552199
| | ||||| | ||| | | || | ||| ||| ||||||||| || | | ||
Sbjct 22416 CCCGCATTCCCAGAATCCAGAAGCTGGTGCAAGA-CTT-TTTCAATGGAAAGGAGCTCAA 22359
Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259
| || | ||||| || ||||||||||| |||||||| || | || || | || ||
Sbjct 22358 CAAGAGCATCAATCCTGACGAGGCTGTTGCTTATGGTGCAGCCGTCCAGGCTTCCATCCT 22299
Query 552260 TTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATC 552319
| ||| | | | ||||| ||| |||| | ||| | ||||| |||| | ||
Sbjct 22298 TAATGGCGATATTTCGGAAAAGACCCAAGATATCTTGCTTTTGGATGTCGCTCCCTTGTC 22239
Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379
||| ||| | || || | |||||| | ||||| |||||| | | || || || ||
Sbjct 22238 TCTCGGTATCGAGACTGCCGGAGGTGTCATGACCCCCCTTATCACTCGCAACACAACGAT 22179
Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439
|||| |||||| | | |||||||| |||||||| || || ||| | | ||| ||
Sbjct 22178 TCCTACGAAAAAAGCCCAGGTATTTTCCACGTATTCTGACAACCAACCCGGAGTTCTTAT 22119
Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAA 552499
|||| | |||||||| || | | | || ||||| ||| || || || | || |
Sbjct 22118 TCAAGTCTTTGAAGGCGAGCGCACCATGACCAAAGACAATCATTTGCTGGGCAAGTTCGA 22059
Query 552500 TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATAT 552559
|| || |||||||| || || || ||||| || || |||||||| ||| | ||||| ||
Sbjct 22058 GTTGGACGGTATTCCACCAGCCCCCCGTGGTGTGCCCCAAATTGAGGTTTCATTCGACAT 21999
Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|||||| ||||| ||| | ||||| |||| ||||||
Sbjct 21998 CGATGCTAATGGCATTCTCAATGTCTCTGCCGTTGATAA 21960
Score = 154 bits (170), Expect = 1e-31
Identities = 402/605 (66%), Gaps = 20/605 (3%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGG---T 550048
||||| ||||| ||||| |||||||| || || |||||||| | | ||| |
Sbjct 23425 GCTATTGGTATTGATTTGGGAACCACCTACTCCTGCGTTGGTGTC---CTTATTGGAGAT 23369
Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108
| || || || ||||| |||||||| || ||||| || ||||| || ||||| | |||
Sbjct 23368 CACGTCGAGATCATTGCAAATGATCAGGGAAACAGGACAACTCCCTCCTATGTCGCATTC 23309
Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168
|| || ||||| | | | | || |||| || ||| |||| || | || ||
Sbjct 23308 ACAGACACTGAGCGTCTTATCGGAGATGGTGCCAAAAATCAGGCTGCCATGAACCCAGAA 23249
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
||||| | || || ||||| ||| | ||||| | ||||| | ||| | | ||| |||
Sbjct 23248 AATACAGTCTTCGACGCTAAGCGTCTGATTGGCCGTCGTTTTGACGATCCAATTGTCCAG 23189
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288
| ||||||||||||||||| ||| | | ||| ||| || || | |||
Sbjct 23188 TCTGATATGAAGCATTGGCCATTCAAGGTCGTTGATGCCAACACCAAGCCCAAGATTAGC 23129
Query 550289 GCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346
| | | ||| || || | || | ||| | || ||| | |||| || ||| |
Sbjct 23128 GTTGAATTCAAGAGCGAAAAG--AAGGAGTTTACTCCCGAAGAGCTTTCTTCCATGATCC 23071
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGT-CAAGAAGTTACGGATGCAGTA 550405
| || |||||||| | || || || | | | ||| | | | | || |||| ||
Sbjct 23070 TCATCAAAATGAAGGAGACTGCTGAAGCATATCTCGGTACTACGA-TCACCAATGCTGTG 23012
Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465
|| || || || || ||||| || || || || || ||||| || || ||||| || |
Sbjct 23011 ATCACGGTTCCTGCCTATTTCAACGATTCTCAGCGCCAAGCAACCAAGGATGCCGGTGCT 22952
Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
||||| || || ||||| || || || ||||| || || || ||||| || | || |||
Sbjct 22951 ATTGCCGGTCTCAATGTGCTCCGCATCATCAACGAGCCCACCGCTGCAGCCATCGCTTAT 22892
Query 550526 GGACTTGATAAACATAATGATCAA----GAACTTAATGTACTCATCTTTGATT---GTGG 550578
|| || |||||||| ||| ||| || | || ||| || |||||||||| ||||
Sbjct 22891 GGTCTCGATAAACAATCTGA-CAAGACCGAGCGTATTGTGCTGATCTTTGATTTGGGTGG 22833
Query 550579 AGGTA 550583
||||
Sbjct 22832 TGGTA 22828
>seq612
Length=74583
Score = 140 bits (154), Expect = 3e-27
Identities = 164/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || |||||||| || || || || |||||| ||||||| || ||||||
Sbjct 29765 AGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTT 29706
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| ||||| ||||| || |||||||| || | ||||| || ||||||||||||||
Sbjct 29705 CCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCC 29646
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| ||||| ||||| || || || |||||| || || | || | || |||||| ||
Sbjct 29645 TTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCG-AAGACTCCACTTCGAGCGT 29587
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || || || ||||| ||||| || |||||||||||
Sbjct 29586 AATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCAT 29548
>seq49
Length=10291
Score = 136 bits (150), Expect = 3e-26
Identities = 162/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320
|| || ||||| ||||| ||| | |||| |||||| || |||| || |||||| ||
Sbjct 9966 AGCACTAGATGGAGGGTTGACTCTTTTTG--AATATTATAGTCAGAGAGCGTTCTTCCAT 10023
Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380
| || || || ||||| ||||| ||||| | |||||| ||||| || ||||||||||| |
Sbjct 10024 CCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGT 10083
Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACA 563439
|||| |||||||| ||||| ||||| || || | || | | ||| || || |
Sbjct 10084 CTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTG-AAGATTCAACTTCTAGCGTGATT 10142
Query 563440 GTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||||| |||||||| ||||| ||||| ||||||||
Sbjct 10143 GTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq33
Length=72831
Score = 123 bits (136), Expect = 2e-22
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||| ||||||||||||||||| ||| || || |||||||| || | || || |
Sbjct 32093 GAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACG 32034
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
| ||| ||||| || |||||||||||||| || | |||||||| || || ||||| ||
Sbjct 32033 TCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTC 31974
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
||||||||||| || || || |||||| || ||| || || | | |||||||
Sbjct 31973 CTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTG-GATTCTACCTCGAGAG 31915
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || || || ||||| || ||||| || ||||||||
Sbjct 31914 TGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCAT 31875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029263634679880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |