Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq49 86.0 5e-12 >seq49 Length=10291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||| | ||| || || ||||||||||||||| || ||||| || ||| | || Sbjct 9965 CAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATC 10024 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || |||||||| || || || || || | || | || || ||||| Sbjct 10025 CTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTC 10084 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || ||||| |||||| | | | ||||| | || || || | ||| || || Sbjct 10085 TTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGT 10144 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 ||| || || | ||||| || || || ||||| ||| || Sbjct 10145 TTTCCCAGTAAGTGTTTTGACGAAGATTTGCATGGTGAGT 10184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934758681676