Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq602 131 3e-25
>seq602
Length=19998
Score = 131 bits (144), Expect = 3e-25
Identities = 314/462 (68%), Gaps = 20/462 (4%)
Strand=Plus/Minus
Query 25582 CATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAAT 25641
|||||| || |||| ||||| || ||||||||||| ||||| || || || || |||
Sbjct 7285 CATTTTATCTCTCACGTTTTGGCCTTTTTTGCAGCCTCCGATGGAATTGTAAATGAAAAT 7226
Query 25642 CTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTC 25701
| | | || | ||||| ||||| | ||||| | || ||||| |||
Sbjct 7225 TTAGTTGTTCGCTTTGCTAGGGAGGTGCAAATCCCAGAGGCTCGTTTCTTTTACGGGTTC 7166
Query 25702 CAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GACGTACAT 25760
|| || || |||||| | || |||||| ||||| || |||||||| ||| ||||
Sbjct 7165 CAAATCATGATGGAAAATATCCATTCTGAGATGTATTCC---CTTCTGATTGAC--ACAT 7111
Query 25761 TACAGACGTCGCCGAGAGAGATCGGCTGT--TTGGT----GCCATCGAGCACATACCCAG 25814
| | || || ||| || || || ||| | |||||||| | || || ||
Sbjct 7110 -ATATTCG-CGATGAGCAGGAGCGTCTAAAATTGTTCAACGCCATCGAATATATCCCTAG 7053
Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT--CAACAGCCAGAGCGCTACGTTT 25872
||| | | || || ||||| |||| ||||| ||| | ||||| | | |||
Sbjct 7052 CATTGAAAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAA-ATCCAGATGCCCCCTTTT 6994
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
|| || | ||||| || ||||| || || |||||||| || || ||| ||||||||
Sbjct 6993 CGC-AGAGACTGGTTGCATTTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTTTGCA 6935
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTT-CCAACGAGCT 25991
|||||||| ||| | || || || ||||| ||||| ||||||| ||||||||||
Sbjct 6934 GCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCT-TACTTTTTCCAACGAGCT 6876
Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033
||||| || ||||||||||| || | || ||||| || ||
Sbjct 6875 GATCAGTAGAGACGAGGGTCTACATACCGAGTTTGCTTGTCT 6834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928837694337280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |