Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq366 192 4e-43 seq49 120 2e-21 seq612 118 7e-21 seq33 107 1e-17 seq587 98.7 6e-15 seq594 89.7 3e-12 >seq366 Length=38039 Score = 192 bits (212), Expect = 4e-43 Identities = 388/569 (68%), Gaps = 24/569 (4%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGG---T 474385 || |||||||||||||| ||||| || ||| || || | ||| | | ||| | Sbjct 23425 GCTATTGGTATTGATTTGGGAACCACCTACTCCTGCGTTGGTGT---CCTTATTGGAGAT 23369 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 | || || || ||||| ||||| || || || || ||||| || || ||||| | || Sbjct 23368 CACGTCGAGATCATTGCAAATGATCAGGGAAACAGGACAACTCCCTCCTATGTCGCATTC 23309 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || || ||||| | |||||| ||||||| ||| ||| |||| ||||| || || | Sbjct 23308 ACAGACACTGAGCGTCTTATCGGAGATGGTGCCAAAAATCAGGCTGCCATGAACCCAGAA 23249 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| | || || ||||| | ||||||| ||| |||||| ||| | | |||||| Sbjct 23248 AATACAGTCTTCGACGCTAAGCGTCTGATTGGCCGTCGTTTTGACGATCCAATTGTCCAG 23189 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA-ACCA---TATAT 474621 ||||||||| |||||||| || ||||| |||| || || |||| | Sbjct 23188 TCTGATATGAAGCATTGGCCATTCAAGGT------CGTTGATGCCAACACCAAGCCCAAG 23135 Query 474622 AGAAGC----AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAA 474677 | ||| ||| || | | |||| || | ||| | || ||| | ||||||| | Sbjct 23134 ATTAGCGTTGAATTCAAG--AGCGAAAAGAAGGAGTTTACTCCCGAAGAGCTTTCTTCCA 23077 Query 474678 TGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG-ACAAGAAGTAACTGAT 474736 || | | ||||||||| | || || ||||||| || || | | | || || Sbjct 23076 TGATCCTCATCAAAATGAAGGAGACTGCTGAAGCATATCTCGGTACTACGA-TCACCAAT 23018 Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || ||||| || ||||| || |||||||| || |||||||| || ||||| Sbjct 23017 GCTGTGATCACGGTTCCTGCCTATTTCAACGATTCTCAGCGCCAAGCAACCAAGGATGCC 22958 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||| ||||| ||||| | || || || || || || || || || || | Sbjct 22957 GGTGCTATTGCCGGTCTCAATGTGCTCCGCATCATCAACGAGCCCACCGCTGCAGCCATC 22898 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAA 474885 ||||||||||| ||||| | |||||||| Sbjct 22897 GCTTATGGTCTCGATAAACAATCTGACAA 22869 Score = 134 bits (148), Expect = 9e-26 Identities = 567/882 (64%), Gaps = 20/882 (2%) Strand=Plus/Minus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 || ||| ||| || |||| || || | |||| |||| | || |||| ||||| Sbjct 22831 GGTACTTTTGATGTTTCTTTGCTCTCCATGGAAGGTGGTGTCTTTGAAGTAAAGGCAACC 22772 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTAT--CATGGTGTG 475427 ||||| || | |||||||| || ||||| |||||| ||| | || ||| | || Sbjct 22771 GCTGGTGACACGCATCTTGGAGGAGAAGACTTTGATTCCAGAATGGTTAGCCAT--TTTG 22714 Query 475428 TTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAAGAC 475487 | || || |||||| | || | ||| || | || | || || | | | Sbjct 22713 TCGAGGAATTCAAGCGCAAGCACAAAAAAGACATCTCTGGAAACGCACGTGCCATCCGCC 22654 Query 475488 GTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTG 475547 ||||| | || || || || ||||||||||| | | || || || || || | | Sbjct 22653 GTCTTCGTACAGCCTGCGAGCGTGCTAAGCGCACCTTGTCCTCAGCCACAACCGCTTCCG 22594 Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 ||||| | || ||||| ||||| || ||||||| | || || || | ||| | Sbjct 22593 TTGAAATCGACTCTCTATTTGAGGGCATTGATTTCTACACCTCCATCACTCGTGCTCGCT 22534 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 |||| || |||| || ||||| | || |||| ||||| ||| | ||||| | Sbjct 22533 TTGAGGAGCTTTGCCAGGACCTCTTCCGCTCTACGCTTGATCCCGTGGAAAAGGTTCTTA 22474 Query 475668 GAGATTCT--AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 |||||| ||| | | |||||| || | |||||||| ||||| || || || || Sbjct 22473 AGGATTCTCAAAAGTCCAAAAATCAG--GTTGACGAAATTGTCCTTGTCGGTGGCTCCAC 22416 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAA 475782 | ||||| | ||| |||| ||| | || | |||| ||||| || || | || Sbjct 22415 CCGCATTCCCAGAATCC-AGAA--GCTGGTGCAAGACTTTTTCAATGGAAAGGAGCTCAA 22359 Query 475783 TGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT--T 475840 | || | |||||||| || |||||||| ||||| || || ||||| || | || | Sbjct 22358 CAAGAGCATCAATCCTGACGAGGCTGTTGCTTATGGTGCAGCCGTCCAGGCTTCCATCCT 22299 Query 475841 TTATCAGGTCAAT-CAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACT 475899 | || | | | | || ||| | | ||| | ||| ||| | || || |||| | Sbjct 22298 TAATGGCGATATTTCGGAAAAGACCCAAGATA-TCTTG--CTTTTGGATGTCGCTCCCTT 22242 Query 475900 TTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCC 475959 || | ||| | || || | ||||| | ||||| ||||| | || || | Sbjct 22241 GTCTCTCGGTATCGAGACTGCCGGAGGTGTCATGACCCCCCTTATCACTCGCAACACAAC 22182 Query 475960 TATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 || || |||||| | | ||||||||||| |||||||| || ||| | || Sbjct 22181 GATTCCTACGAAAAAAGCCCAGGTATTTTCCACGTATTCTGACAACCAACCCGGAGTTCT 22122 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || ||| |||||||||| || | | | || ||||| ||| | || || | || Sbjct 22121 TATTCAAGTCTTTGAAGGCGAGCGCACCATGACCAAAGACAATCATTTGCTGGGCAAGTT 22062 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||||| || || ||| | || || || |||||||| ||| | || || Sbjct 22061 CGAGTTGGACGGTATTCCACCAGCCCCCCGTGGTGTGCCCCAAATTGAGGTTTCATTCGA 22002 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || ||||| ||||| ||||| ||||| |||| |||||| Sbjct 22001 CATCGATGCTAATGGCATTCTCAATGTCTCTGCCGTTGATAA 21960 >seq49 Length=10291 Score = 120 bits (132), Expect = 2e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || || ||||| || || ||||| || |||||| |||| || ||||| ||| Sbjct 9966 AGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCC 10025 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || || |||||||||||||| ||||| ||||| || ||||| || |||||||| |||||| Sbjct 10026 TCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCT 10085 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 || || ||||| || ||| |||||| || || | | | ||| || || || ||| Sbjct 10086 TGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTT 10145 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||| Sbjct 10146 TTCCCAGTAAGTGTTTTGACGAAGATTTG 10174 >seq612 Length=74583 Score = 118 bits (130), Expect = 7e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || |||||||| || || || || || ||||||||||| || ||| Sbjct 29768 CGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTT 29709 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 || ||| ||||| || || || |||||||| || || || || || |||||||||||| Sbjct 29708 CTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCT 29649 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||| || || || || ||| ||||| || || | | | | ||| || Sbjct 29648 TCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCA-CTTCGAG 29590 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || || || || |||||||| Sbjct 29589 CGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTG 29551 >seq33 Length=72831 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||||||||||||||| ||| || || | ||| || || | || || Sbjct 32096 ACGGAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGT 32037 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| |||||||| |||||||| || || || ||||| || || ||||| Sbjct 32036 ACGTCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCC 31977 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||| ||||||||||| |||||| ||||| || ||| || | || || Sbjct 31976 CTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAG 31917 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || |||||||| || ||||| Sbjct 31916 AGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTG 31878 >seq587 Length=23816 Score = 98.7 bits (108), Expect = 6e-15 Identities = 255/386 (66%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || |||||| |||| ||||| ||||| |||||||| || ||| | || || || Sbjct 19834 AATCCGGACGAAGCTATTGCGTATGGTGCTGCCGTCCAAGCCGCAATTATTTCGGGAGAA 19775 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 ||| || ||| | |||| || | ||||||| || ||||| | || || Sbjct 19774 ---GACAAGT--CTAG-TGATATCGTTTTGCTTGACGTTTGCCCTCTTTCTCTTGGCATT 19721 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| || || ||||||||| || || | ||||| || | ||||| |||| Sbjct 19720 GAAACGACCGGTGGTGTTATGACTACGCTGATAAAAAGAAACACAGCCATCCCCAGCAAG 19661 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 | | | ||||||||| | | ||||| || | |||||| ||| || ||| Sbjct 19660 CGTACGCAGATCTTTTCCACTGCTGCGGATAACCAGTCTACTGTAGAAATCAAAGTCTAC 19601 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 || || || | | | ||| ||| ||||| || || | ||| ||| || Sbjct 19600 GAGGGCGAGCGTACTCTTACTCGAGACAATAATCTTCTCGGTAAATTTTCGCTTTCTGGG 19541 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||| || ||||| | || ||||||||||| || || ||||||||| |||| ||| Sbjct 19540 ATTCCCCCGGCTCCGCGTGGCGTTCCTCAAATCGAGGTCGTTTTTGATATCGATGTCAAT 19481 Query 476153 GGTATTCTTAATGTTACTGCTTGTGA 476178 ||| | ||| ||| | ||| | ||| Sbjct 19480 GGTGTCCTTCGTGTAAATGCCTATGA 19455 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| || || |||||||| | ||| ||| |||||||||||||||||||| Sbjct 20497 GCCGTCATTACGGTGCCTGCATATTTCACAGATAGTCAGCGTCAAGCAACTAAAGATGCA 20438 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| ||||| || | || || || || |||||||| || || || ||||| || Sbjct 20437 GGAGTCATTGCCGGCTTGAAGGTCGATCGCATCATTAATGAGCCCACGGCTGCCGCCATT 20378 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAAAGAAG-TAAATGTTTTAATCTTTGATTGTGG 474915 || ||||| || ||| || | ||||| || | | ||||||| | |||||| || Sbjct 20377 GCCTATGGACTCGATCGCAAAT----CAAAGGAGATGACTGTTTTAGTTTTTGATCTCGG 20322 Query 474916 AGG 474918 ||| Sbjct 20321 AGG 20319 >seq594 Length=21442 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || |||||||| |||||| | || || || || || ||||||| Sbjct 18500 ATGCCGTTGTGACTGTGCCTGCATATTTCAATGATGCCCAGCGCCAGGCCACAAAAGATG 18441 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| || | |||| | ||| |||| ||||| || || || || || | Sbjct 18440 CAGGTACTATTGCTGGGTTGGATGTCCTTCGTGTTATCAATGAGCCTACGGCCGCAGCTC 18381 Query 474855 TTGCTTATGGTCTTGATAA 474873 |||| ||||||||||| || Sbjct 18380 TTGCGTATGGTCTTGACAA 18362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268152948350576