Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq113 208 9e-49 seq122 87.8 2e-12 >seq113 Length=5777 Score = 208 bits (230), Expect = 9e-49 Identities = 674/1040 (65%), Gaps = 16/1040 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||||| || ||||| | || || | ||||| ||||| |||||| | || |||| | Sbjct 5085 CCCCAGTATCTGATCATGAGAGTTGCGCTTGGCATTCACGGTGAAGACGTCGACTCTGCC 5026 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | || || || | |||||| || | ||||||| || || | |||||||| || Sbjct 5025 ATCGAAACGTATAATTTGATGTCTCAGCGGATGTTCACCCATGCCTCCCCAACCCTTTTT 4966 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 ||||| |||||||| | || ||| | || || || | || || | | || || Sbjct 4965 AATGCCGGTACACCGCGGCCCCAGCTTTCATCCTGTTTTTTGATTGCAATGACTGACGAT 4906 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || |||| ||| || |||| || || | ||||| || |||| || ||| Sbjct 4905 TCGATCACCGGAATATATGACACCCTGAAAACATGTGCATTGATTAGCAAGTCTGCCGGG 4846 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 ||| |||| | || |||||| || | |||||| | ||| |||| || ||| | Sbjct 4845 GGTGTTGGTCTTCATATCCATAATATAAGAGCCTCTGGGTCTTATATTGCTGGAACAGGT 4786 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 || | ||| | ||||| | || |||||||| || | |||| || || || ||||| Sbjct 4785 GGCTACTCAAACGGTATAGTCCCCATGCTTCGTGTCTATAACATGACTGCACGATATGTC 4726 Query 75572 AATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCC 75628 |||||| ||| | || || || | || | || ||||| || ||||| || Sbjct 4725 GATCAAGGCGGGAATAAACGACCTGGCGCCTTTGCAATTTATTTGGAGCCCTGGCACGCT 4666 Query 75629 GATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGA 75688 ||| | | || ||| | || ||| || || | || |||| |||||| || Sbjct 4665 GATGTTTTCGATTTCTTGGATTTAAAGAAAAATTTTGGAAAAGACGAGGGTCGGTGCAGG 4606 Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 ||||| |||| |||| ||||| || || || |||||||| || || ||| | | ||| Sbjct 4605 GATCTTTTTTATGCCCTATGGATACCCGATCTGTTCATGAAACGAGTGGAGCAAGATGGG 4546 Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA--GG 75806 ||| |||||||||||||| | | || |||||| | |||||| || || || || Sbjct 4545 ATGTGGACTCTTTTCTGTCCAAATGACGCTCCAGGTTTGTCCGACT--GTTGGGGACCGG 4488 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAG 75866 ||||||||| | || | ||||| | | ||| | | || | || | Sbjct 4487 AGTTTGAAGAGTTATATGCTTCATATGAGGCCAAAGGTCTTGGTCGTAAAACGATCCCTG 4428 Query 75867 CCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 || | | ||| | || ||||| | | || ||| || ||||| ||||| |||| Sbjct 4427 CCCAAAAGCTCTGGTATGCCATTCTTGATGCGCAAGTGGAAACCGGAACGCCATACATGC 4368 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | | || ||| |||| ||| ||| ||| ||||| || |||| || ||||| |||| Sbjct 4367 TCTTTAAAGATTCTTGCAACGCAAAGTCTAATCAAAAAAACCTGGGGACCATCAAAAGCT 4308 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 |||| | || || ||||| | ||||| || || |||||| | ||||| || Sbjct 4307 CAAACTTGTGTACAGAAATCATCCAGTACTCATCAAAAGATGAGGTTTCCGTTTGTAACC 4248 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106 | || || || || ||||| | || | |||| ||| ||| | ||||||||| ||| | Sbjct 4247 TCGCTTCCATTGCACTTCCGATGTTTATCAA--AAGCGAC-GGGTCTTTTGATTTTGATA 4191 Query 76107 AACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATT 76166 || ||| | | | || | || || |||||||| || | || || || | Sbjct 4190 TGCTACATTATGTTGCCAAAGTGGTAACAAAAAATCTTAATAATATTATCGATGTCAACT 4131 Query 76167 TTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGG 76223 | ||||| || ||| || |||| || |||||| |||| ||||| ||||| | | Sbjct 4130 TCTATCCTGTCGAGGAGGCTAGGCGA---TCAAATATGAGACATAGACCGATTGGAATTG 4074 Query 76224 GTGTTCAAGGTCTCGCGGAT 76243 | || |||||||| || ||| Sbjct 4073 GCGTCCAAGGTCTTGCAGAT 4054 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/243 (70%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 76702 TGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGT 76761 ||| || ||| ||||| | || || || || || || | | | || || | || || Sbjct 3595 TGGCTCAATTGCGAATATACCCGAGATTCCTGAAGACATAAGGCACCTTTATAGGACCGT 3536 Query 76762 GTGGGAAAT-CAAGATGAAAGATG-TCATTGACATGGCCGCAGATCGTGGTCGCTTCATT 76819 ||||||||| | | | ||||| ||||||| ||||||| || || || ||| || Sbjct 3535 GTGGGAAATTCCACA--AAAGAGCATCATTGATATGGCCGTGGACCGAGGCGCCTTTATC 3478 Query 76820 GATCAAAGTCAAAGTATGAATCTATTCA---TGGAAAGTCCAACGATGTCCAAGCTCTCT 76876 || ||||| || | | ||| ||||| || || || | || || |||||| || Sbjct 3477 GACCAAAGCCAGTCTCTCAAT--ATTCACATTGCCGAG-CCTTCCATCTCGAAGCTCACT 3421 Query 76877 TCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGATCA 76936 ||||||||| | ||| |||||||| ||||||| || ||||| ||||| ||||| ||| || Sbjct 3420 TCTATGCATTTTTACTCGTGGAAAAAGGGGCTAAAGACCGGCATGTATTATCTGCGAACA 3361 Query 76937 AAG 76939 ||| Sbjct 3360 AAG 3358 >seq122 Length=58243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||||||||| |||||| || || || || || | | || ||||| Sbjct 23204 CCTGGAACCGGAAAGACCCTTCTCGCCAAGGCGATGGCCGGGGAGGCCGAGGTTCCATTT 23145 Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 | ||| | || | || | |||||||| |||||||||||||| ||||| | | Sbjct 23144 CTTTCCATT--TCGGGGGCCGAATTTGTGGAAATGTTTGTTGGTGTCGGTGCTTCTCGTG 23087 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA--ACCATGTATTGTCTTCATTGATGA 175490 | || ||||| |||||| || ||||||| | ||| |||||||| || |||||||| Sbjct 23086 TCCGTGATCTATTTGAAGAAGC--GCGAAAAATAGCACCTTGTATTGTGTTTATTGATGA 23029 Query 175491 GATTGATGC 175499 ||| ||||| Sbjct 23028 GATCGATGC 23020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565036242560