Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq113 208 9e-49
seq122 87.8 2e-12
>seq113
Length=5777
Score = 208 bits (230), Expect = 9e-49
Identities = 674/1040 (65%), Gaps = 16/1040 (2%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||||| || ||||| | || || | ||||| ||||| |||||| | || |||| |
Sbjct 5085 CCCCAGTATCTGATCATGAGAGTTGCGCTTGGCATTCACGGTGAAGACGTCGACTCTGCC 5026
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331
| || || || | |||||| || | ||||||| || || | |||||||| ||
Sbjct 5025 ATCGAAACGTATAATTTGATGTCTCAGCGGATGTTCACCCATGCCTCCCCAACCCTTTTT 4966
Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391
||||| |||||||| | || ||| | || || || | || || | | || ||
Sbjct 4965 AATGCCGGTACACCGCGGCCCCAGCTTTCATCCTGTTTTTTGATTGCAATGACTGACGAT 4906
Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451
|| |||| ||| || |||| || || | ||||| || |||| || |||
Sbjct 4905 TCGATCACCGGAATATATGACACCCTGAAAACATGTGCATTGATTAGCAAGTCTGCCGGG 4846
Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511
||| |||| | || |||||| || | |||||| | ||| |||| || ||| |
Sbjct 4845 GGTGTTGGTCTTCATATCCATAATATAAGAGCCTCTGGGTCTTATATTGCTGGAACAGGT 4786
Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571
|| | ||| | ||||| | || |||||||| || | |||| || || || |||||
Sbjct 4785 GGCTACTCAAACGGTATAGTCCCCATGCTTCGTGTCTATAACATGACTGCACGATATGTC 4726
Query 75572 AATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCC 75628
|||||| ||| | || || || | || | || ||||| || ||||| ||
Sbjct 4725 GATCAAGGCGGGAATAAACGACCTGGCGCCTTTGCAATTTATTTGGAGCCCTGGCACGCT 4666
Query 75629 GATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGA 75688
||| | | || ||| | || ||| || || | || |||| |||||| ||
Sbjct 4665 GATGTTTTCGATTTCTTGGATTTAAAGAAAAATTTTGGAAAAGACGAGGGTCGGTGCAGG 4606
Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748
||||| |||| |||| ||||| || || || |||||||| || || ||| | | |||
Sbjct 4605 GATCTTTTTTATGCCCTATGGATACCCGATCTGTTCATGAAACGAGTGGAGCAAGATGGG 4546
Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA--GG 75806
||| |||||||||||||| | | || |||||| | |||||| || || || ||
Sbjct 4545 ATGTGGACTCTTTTCTGTCCAAATGACGCTCCAGGTTTGTCCGACT--GTTGGGGACCGG 4488
Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAG 75866
||||||||| | || | ||||| | | ||| | | || | || |
Sbjct 4487 AGTTTGAAGAGTTATATGCTTCATATGAGGCCAAAGGTCTTGGTCGTAAAACGATCCCTG 4428
Query 75867 CCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926
|| | | ||| | || ||||| | | || ||| || ||||| ||||| ||||
Sbjct 4427 CCCAAAAGCTCTGGTATGCCATTCTTGATGCGCAAGTGGAAACCGGAACGCCATACATGC 4368
Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986
| | || ||| |||| ||| ||| ||| ||||| || |||| || ||||| ||||
Sbjct 4367 TCTTTAAAGATTCTTGCAACGCAAAGTCTAATCAAAAAAACCTGGGGACCATCAAAAGCT 4308
Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046
|||| | || || ||||| | ||||| || || |||||| | ||||| ||
Sbjct 4307 CAAACTTGTGTACAGAAATCATCCAGTACTCATCAAAAGATGAGGTTTCCGTTTGTAACC 4248
Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106
| || || || || ||||| | || | |||| ||| ||| | ||||||||| ||| |
Sbjct 4247 TCGCTTCCATTGCACTTCCGATGTTTATCAA--AAGCGAC-GGGTCTTTTGATTTTGATA 4191
Query 76107 AACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATT 76166
|| ||| | | | || | || || |||||||| || | || || || |
Sbjct 4190 TGCTACATTATGTTGCCAAAGTGGTAACAAAAAATCTTAATAATATTATCGATGTCAACT 4131
Query 76167 TTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGG 76223
| ||||| || ||| || |||| || |||||| |||| ||||| ||||| | |
Sbjct 4130 TCTATCCTGTCGAGGAGGCTAGGCGA---TCAAATATGAGACATAGACCGATTGGAATTG 4074
Query 76224 GTGTTCAAGGTCTCGCGGAT 76243
| || |||||||| || |||
Sbjct 4073 GCGTCCAAGGTCTTGCAGAT 4054
Score = 96.9 bits (106), Expect = 4e-15
Identities = 171/243 (70%), Gaps = 10/243 (4%)
Strand=Plus/Minus
Query 76702 TGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGT 76761
||| || ||| ||||| | || || || || || || | | | || || | || ||
Sbjct 3595 TGGCTCAATTGCGAATATACCCGAGATTCCTGAAGACATAAGGCACCTTTATAGGACCGT 3536
Query 76762 GTGGGAAAT-CAAGATGAAAGATG-TCATTGACATGGCCGCAGATCGTGGTCGCTTCATT 76819
||||||||| | | | ||||| ||||||| ||||||| || || || ||| ||
Sbjct 3535 GTGGGAAATTCCACA--AAAGAGCATCATTGATATGGCCGTGGACCGAGGCGCCTTTATC 3478
Query 76820 GATCAAAGTCAAAGTATGAATCTATTCA---TGGAAAGTCCAACGATGTCCAAGCTCTCT 76876
|| ||||| || | | ||| ||||| || || || | || || |||||| ||
Sbjct 3477 GACCAAAGCCAGTCTCTCAAT--ATTCACATTGCCGAG-CCTTCCATCTCGAAGCTCACT 3421
Query 76877 TCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGATCA 76936
||||||||| | ||| |||||||| ||||||| || ||||| ||||| ||||| ||| ||
Sbjct 3420 TCTATGCATTTTTACTCGTGGAAAAAGGGGCTAAAGACCGGCATGTATTATCTGCGAACA 3361
Query 76937 AAG 76939
|||
Sbjct 3360 AAG 3358
>seq122
Length=58243
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/189 (71%), Gaps = 8/189 (4%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || ||||||||||| |||||| || || || || || | | || |||||
Sbjct 23204 CCTGGAACCGGAAAGACCCTTCTCGCCAAGGCGATGGCCGGGGAGGCCGAGGTTCCATTT 23145
Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432
| ||| | || | || | |||||||| |||||||||||||| ||||| | |
Sbjct 23144 CTTTCCATT--TCGGGGGCCGAATTTGTGGAAATGTTTGTTGGTGTCGGTGCTTCTCGTG 23087
Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA--ACCATGTATTGTCTTCATTGATGA 175490
| || ||||| |||||| || ||||||| | ||| |||||||| || ||||||||
Sbjct 23086 TCCGTGATCTATTTGAAGAAGC--GCGAAAAATAGCACCTTGTATTGTGTTTATTGATGA 23029
Query 175491 GATTGATGC 175499
||| |||||
Sbjct 23028 GATCGATGC 23020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596565036242560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |