Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq49 129 1e-24 seq612 109 1e-18 >seq49 Length=10291 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||| ||| | || | |||||| |||||||| ||||| | |||| | |||| ||| Sbjct 9969 ACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTCC 10028 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || || |||||||| || | | || || ||||| |||||||||||||| ||||| Sbjct 10029 AGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTGG 10088 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| | |||||||| || | ||||| ||||| |||||||| || || ||||| Sbjct 10089 ATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTTC 10148 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| | || || ||||| Sbjct 10149 CCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq612 Length=74583 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| | ||||| | |||| || | ||||| || ||||| || | | | Sbjct 29729 ATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGC 29670 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || |||||||| || ||||| ||||| | || ||||| || | Sbjct 29669 TGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTG 29610 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || ||||| || |||||||| || || || | |||||| | ||| || ||| Sbjct 29609 TCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGC 29550 Query 192535 ATT 192537 ||| Sbjct 29549 ATT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984472280446200