Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq49 129 1e-24
seq612 109 1e-18
>seq49
Length=10291
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|||| ||| | || | |||||| |||||||| ||||| | |||| | |||| |||
Sbjct 9969 ACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTCC 10028
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| || || |||||||| || | | || || ||||| |||||||||||||| |||||
Sbjct 10029 AGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTGG 10088
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| | |||||||| || | ||||| ||||| |||||||| || || |||||
Sbjct 10089 ATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTTC 10148
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | |||||| | || || |||||
Sbjct 10149 CCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq612
Length=74583
Score = 109 bits (120), Expect = 1e-18
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|||||||||||||| | ||||| | |||| || | ||||| || ||||| || | | |
Sbjct 29729 ATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGC 29670
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || || || |||||||| || ||||| ||||| | || ||||| || |
Sbjct 29669 TGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTG 29610
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || ||||| || |||||||| || || || | |||||| | ||| || |||
Sbjct 29609 TCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGC 29550
Query 192535 ATT 192537
|||
Sbjct 29549 ATT 29547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984472280446200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |