Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq49 136 7e-27 seq612 102 1e-16 >seq49 Length=10291 Score = 136 bits (150), Expect = 7e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 171839 AATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAAT 171897 |||| || |||| |||| | |||| ||| | || | |||||| ||||||||| | Sbjct 9946 AATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGT 10005 Query 171898 CTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAG 171957 | || | | || | | || |||| || || |||||||| || | | || ||||||| Sbjct 10006 CAGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAG 10065 Query 171958 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATT 172017 | |||||||||||||| ||||| ||||| | |||||||| || || ||||| |||| Sbjct 10066 GCGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATT 10125 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | |||||||| || || ||||| ||||| | |||||| | ||| || ||||| Sbjct 10126 CAACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq612 Length=74583 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || | | || | | || || | ||||| || |||||||| | | Sbjct 29730 AATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCG 29671 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || |||||||| || ||||| ||||| | || ||||| || || Sbjct 29670 CTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGT 29611 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || || ||||| || |||||||| || || || | |||||| | || || || Sbjct 29610 GTCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTG 29551 Query 172067 CATT 172070 |||| Sbjct 29550 CATT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905129075709600