Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq49 158 1e-33 seq612 140 3e-28 >seq49 Length=10291 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | ||||| || || || ||||| || ||||| ||||| ||| | Sbjct 10180 ACCATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCT 10121 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| ||||| ||||| ||||||||||||||||||||||| || || Sbjct 10120 TCAGACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGAC 10061 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | || ||||| || || |||||||||||| |||| | || || ||| Sbjct 10060 CAGCAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTAT 10001 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || || || | ||| || || |||| ||||| Sbjct 10000 AATATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGG 9951 >seq612 Length=74583 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || || || |||||||||||||| || | | Sbjct 29548 ATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTCG 29607 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || ||||||||||| |||||||| ||||| || || Sbjct 29608 GACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 29667 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || |||||||| |||||| |||| | || |||||||| Sbjct 29668 CAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAAT 29727 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || | ||| | || | |||||||| Sbjct 29728 ATTCAGAAGGAGTCCACGCTCCATCTTGTGCTTCGTCTTCGCGGAGG 29774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894158283360