Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq612 93.3 3e-14 seq49 87.8 1e-12 >seq612 Length=74583 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||||||||| | || ||||| |||||||| ||||| |||| || Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || ||||| || ||||| ||||| | || || || Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| ||| || |||||||| ||||||| |||||| | | ||||| || Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 110452 CATTCAAAAAGAATCTACG 110470 ||||| || || || ||| Sbjct 29727 TATTCAGAAGGAGTCCACG 29745 >seq49 Length=10291 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| | || || ||||| || || | ||| || || Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| || || || ||||||||||| | || || || Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || || ||||||||||||| ||||| | | || || || Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAAT 9998 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||||||||| || || | || | ||| | ||||||||||| ||| Sbjct 9997 ATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGGA 9950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838520717716