Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq33 102 5e-17
seq49 89.7 3e-13
seq612 84.2 1e-11
>seq33
Length=72831
Score = 102 bits (112), Expect = 5e-17
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| || || ||||| || || | || |||| || || ||||||||||| ||
Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||| || | || | |||||||| || | || || ||||| |
Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGAC--A 31949
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | ||| ||| || || || | || ||||||||||| || ||||||||
Sbjct 31948 TTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTA 31889
Query 34964 ACAAAGATCTGCAT 34977
|||||||| |||||
Sbjct 31888 ACAAAGATTTGCAT 31875
>seq49
Length=10291
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806
|| |||||| | || ||||| || || || | ||| ||| || ||||| ||||||||
Sbjct 9947 ATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTC 10006
Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866
|| || | | |||| ||||| |||||||| || || || || ||||||||||| |
Sbjct 10007 AGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGG 10066
Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926
||| | || || ||||| | |||||||| || || | | || | || | ||
Sbjct 10067 CGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTC 10126
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || | || || || || || || || || || || ||||| ||||||
Sbjct 10127 AACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCATG 10178
>seq612
Length=74583
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||||||||| ||||| || || || | | |||| || || || || || || ||
Sbjct 29739 CTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAA 29680
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||||||| | || | || |||||||| | ||||| || || || |
Sbjct 29679 AATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCAC--A 29622
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || | ||| || || | || |||||||| ||||| || || ||
Sbjct 29621 TTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTG 29562
Query 34964 ACAAAGATCTGCAT 34977
||||| || |||||
Sbjct 29561 ACAAAAATTTGCAT 29548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690370738828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |