Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq33 102 5e-17 seq49 89.7 3e-13 seq612 84.2 1e-11 >seq33 Length=72831 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || || | || |||| || || ||||||||||| || Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| || | || | |||||||| || | || || ||||| | Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGAC--A 31949 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| ||| || || || | || ||||||||||| || |||||||| Sbjct 31948 TTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTA 31889 Query 34964 ACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 31888 ACAAAGATTTGCAT 31875 >seq49 Length=10291 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 || |||||| | || ||||| || || || | ||| ||| || ||||| |||||||| Sbjct 9947 ATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTC 10006 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 || || | | |||| ||||| |||||||| || || || || ||||||||||| | Sbjct 10007 AGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGG 10066 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 ||| | || || ||||| | |||||||| || || | | || | || | || Sbjct 10067 CGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTC 10126 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | || || || || || || || || || || ||||| |||||| Sbjct 10127 AACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCATG 10178 >seq612 Length=74583 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||||||||| ||||| || || || | | |||| || || || || || || || Sbjct 29739 CTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAA 29680 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | || |||||||| | ||||| || || || | Sbjct 29679 AATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTCTGCTTCAC--A 29622 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || | ||| || || | || |||||||| ||||| || || || Sbjct 29621 TTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTG 29562 Query 34964 ACAAAGATCTGCAT 34977 ||||| || ||||| Sbjct 29561 ACAAAAATTTGCAT 29548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690370738828