Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq366 325 3e-83 seq594 105 5e-17 seq598 91.5 1e-12 >seq366 Length=38039 Score = 325 bits (360), Expect = 3e-83 Identities = 971/1481 (66%), Gaps = 33/1481 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 |||||| |||||| ||||| ||||| ||||| ||||| | || |||| || |||||| Sbjct 21960 TTATCAACGGCAGAGACATTGAGAATGCCATTAGCATCGATGTCGAATGAAACCTCAATT 22019 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || || | | || ||||| || || ||||| | || | ||||| || | Sbjct 22020 TGGGGCACACCACGGGGGGCTGGTGGAATACCGTCCAACTCGAACTTGCCCAGCAAATGA 22079 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || ||||| || | | || || || || || | ||| ||| |||| | | ||| || Sbjct 22080 TTGTCTTTGGTCATGGTGCGCTCGCCTTCAAAGACTTGAATAAGAACTCCGGGTTGGTTG 22139 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || ||||| || | |||||| || |||||| |||||| |||||||| | | ||| Sbjct 22140 TCAGAATACGTGGAAAATACCTGGGCTTTTTTCGTAGGAATCGTTGTGTTGCGAGTGATA 22199 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | |||||| | ||| || || || || | ||| ||||| | |||| |||||| | Sbjct 22200 AGGGGGGTCATGACACCTCCGGCAGTCTCGATACCGAGAGACAAGGGAGCGACATCCAAA 22259 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 || | |||| ||| ||||| | | | ||| ||| || | || || | || Sbjct 22260 AGCAAGATATCTTGGGTCTTTTCCGAAATATCGCCATTAAGGATGGAAGCCTGGACGGCT 22319 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| || |||||||| | | | || || | || ||||||||| Sbjct 22320 GCACCATAAGCAACAGCCTCGTCAGGATTGATGCTCTTGTTGAGCTCCTTTCCATTGAAA 22379 Query 281837 AAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||| | | || | | | ||||| || | || || || || | ||||| Sbjct 22380 AAGTCTTGCACCAGCTTCT-GGATTCTGGGAATGCGGGTGGAGCCACCGACAAGGACAAT 22438 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTT--GAATCCAATAAAACTTTTTCAACGGGTTCA 281953 ||| | ||| |||||| | | |||| |||||| | ||| ||||| ||||| ||| Sbjct 22439 TTCGTCAACC--TGATTTTTGGACTTTTGAGAATCCTTAAGAACCTTTTCCACGGGATCA 22496 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || || | || | ||| ||||| || || || ||| | ||| | | | Sbjct 22497 AGCGTAGAGCGGAAGAGGTCCTGGCAAAGCTCCTCAAAGCGAGCACGAGTGATGGAGGTG 22556 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA--GTTTGAGTCGAAGAAG 282071 | ||||||| || || || | ||| || | ||||| | | | ||| | | || | Sbjct 22557 TAGAAATCAATGCCCTCAAATAGAGAGTCGATTTCAACGGAAGCGGTTGTGGCTGAGGAC 22616 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 282131 | ||| || |||||||| || || ||||| | || | || | ||| ||| | Sbjct 22617 AAGGTG--CGCTTAGCACGCTCGCAGGCTGTACGAAGACGGCGGATGGCACGTGCGTTTC 22674 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 | | ||| |||| | || | |||||| || || ||| | ||| | || | | Sbjct 22675 CAGAGATGTCTTTTTTGTGCTTGCGCTTGAATTCCTCGACAAA--ATGGCTAACCATTCT 22732 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 |||||| ||||| ||||| | | || | || | || || |||||| || | Sbjct 22733 GGAATCAAAGTCTTCTCCTCCAAGATGCGTGTCACCAGCGGTTGCCTTTACTTCAAAGAC 22792 Query 282250 TCCATCTTCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 ||| |||| | |||| ||||| ||||||| || |||||||||| |||||| || Sbjct 22793 ACCACCTTCCATGGAGAGCAAAGA--AACATCAAAAGTACCACCACCCAAATCAAAGATC 22850 Query 282308 AGTACATTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || ||| | || ||||| | |||||| |||||||| || | || ||||| Sbjct 22851 AGCACAATACGCTCGGTCTTGTCAGATTGTTTATCGAGACCATAAGCGATGGCTGCAGCG 22910 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || || || || || | | ||||| ||||| ||||| || ||||| || || Sbjct 22911 GTGGGCTCGTTGATGATGCGGAGCACATTGAGACCGGCAATAGCACCGGCATCCTTGGTT 22970 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 ||||| | || |||||||| ||||| |||||||| || || || |||| || | || Sbjct 22971 GCTTGGCGCTGAGAATCGTTGAAATAGGCAGGAACCGTGATCACAGCATTGGTGA--TCG 23028 Query 282485 T--TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 | | || | ||| || || || | |||||||| | | ||||| || |||| | Sbjct 23029 TAGTACCGAGATATGCTTCAGCAGTCTCCTTCATTTTGATGAGGATCATGGAAGAAAGCT 23088 Query 282543 GTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTA 282601 ||| |||| | | | ||| ||| | |||| || || || | || || | Sbjct 23089 CTTCGGGAGTAAACTCCTTCTTTTCGCTCTTGA-ATTCAACGCTAATCTTGGGCTTGGTG 23147 Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661 ||| || || || |||||||||| |||||||| || || ||| || | || | | Sbjct 23148 TTGGCATCAACGACCTTGAATGGCCAATGCTTCATATCAGACTGGACAATTGGATCGTCA 23207 Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 ||| | ||||| | || || || || || | ||||| ||| || | ||||| Sbjct 23208 AAACGACGGCCAATCAGACGCTTAGCGTCGAAGACTGTATTTTCTGGGTTCATGGCAGCC 23267 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| |||||| ||||||| || ||| | || || ||||| |||| ||||| || ||| Sbjct 23268 TGATTTTTGGCACCATCTCCGATAAGACGCTCAGTGTCTGTGAATGCGACATAGGAGGGA 23327 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTA---CCATTTTGCCATACA 282838 ||||| | || || |||||||| ||||| || || || | | ||| | | ||| Sbjct 23328 GTTGTCCTGTTTCCCTGATCATTTGCAATGATCTCGACGTGATCTCCAATAAG---GACA 23384 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || || | || ||||| ||||||||||||||||| Sbjct 23385 CCAACGCAGGAGTAGGTGGTTCCCAAATCAATACCAATAGC 23425 >seq594 Length=21442 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 |||| |||||||||||||||| ||| || || || || ||||| |||| | | |||| Sbjct 18360 TTTTGTCAAGACCATACGCAAGAGCTGCGGCCGTAGGCTCATTGATAACACGAAGGACAT 18419 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | |||||||| | ||||||||||| ||||| || | || | ||| || ||||||| Sbjct 18420 CCAACCCAGCAATAGTACCTGCATCTTTTGTGGCCTGGCGCTGGGCATCATTGAAATATG 18479 Query 282453 CAGGAACAGTAATAACGGCAT 282473 |||| ||||| | |||||||| Sbjct 18480 CAGGCACAGTCACAACGGCAT 18500 >seq598 Length=20540 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 |||||||| || |||||||| || |||||||| || || | | || | |||||||| Sbjct 19593 AAATGTACTCTCATTTTGACTGAAGGAGATTCTGCAAAGGCCCTGGCAGTTTCTGGCCTC 19534 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 || ||||||| ||||||| |||||||| || ||| | || |||||||||||||| Sbjct 19533 TCCGTAGTTGGAAGGGATTATTTTGGAGTTTATCCGCTTCGTGGGAAACTTTTGAATGTG 19474 Query 400414 AGGGATGC 400421 | ||||| Sbjct 19473 CGCGATGC 19466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740600353386312