Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq33 141 2e-28 seq49 134 3e-26 seq612 131 3e-25 >seq33 Length=72831 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||||||| || ||||| ||||| || || || || | | || || || || || Sbjct 32077 TGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGC 32018 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| ||||| || || | || ||||| || || ||||| ||||||||||||||||| Sbjct 32017 TTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTG 31958 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| || ||| | | |||||| || | ||| || ||||| ||||| Sbjct 31957 GCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTA 31898 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| || ||||| Sbjct 31897 AGGGTCTTAACAAAGATTTGCAT 31875 >seq49 Length=10291 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| || | ||| |||| || || || || ||||| || |||||||| ||||| Sbjct 9951 CCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAG 10010 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || || || || || ||||||||||| || || | ||| || || || ||| Sbjct 10011 AGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGT 10070 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| || ||| |||||||||||||| || || || ||| ||| Sbjct 10071 ATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACT 10130 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || || | || || || || || ||||| Sbjct 10131 TCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq612 Length=74583 Score = 131 bits (144), Expect = 3e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || || || || || ||||| |||||||||||||| Sbjct 29774 CCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAG 29715 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || || || || ||||| || ||||| || || | || || |||||||| Sbjct 29714 AGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGA 29655 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| || || ||| || ||||| ||||| || || || || || Sbjct 29654 ATTCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTCTCAATGGTGTCCGAAGACTCCAC 29596 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | || || |||||||| || | || || ||||| || |||||| Sbjct 29595 TTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819501247468