Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq33 141 2e-28
seq49 134 3e-26
seq612 131 3e-25
>seq33
Length=72831
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| |||||||| || ||||| ||||| || || || || | | || || || || ||
Sbjct 32077 TGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGC 32018
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
||||| ||||| || || | || ||||| || || ||||| |||||||||||||||||
Sbjct 32017 TTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTG 31958
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || ||||| ||||| || ||| | | |||||| || | ||| || ||||| |||||
Sbjct 31957 GCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTA 31898
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| ||||| || |||||
Sbjct 31897 AGGGTCTTAACAAAGATTTGCAT 31875
>seq49
Length=10291
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||||| || | ||| |||| || || || || ||||| || |||||||| |||||
Sbjct 9951 CCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAG 10010
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| |||| || || || || || ||||||||||| || || | ||| || || || |||
Sbjct 10011 AGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGT 10070
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|||||||| || ||||| || ||| |||||||||||||| || || || ||| |||
Sbjct 10071 ATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACT 10130
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || || || || || | || || || || || |||||
Sbjct 10131 TCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq612
Length=74583
Score = 131 bits (144), Expect = 3e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||| || || | || || || || || ||||| ||||||||||||||
Sbjct 29774 CCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAG 29715
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| |||| || || || || ||||| || ||||| || || | || || ||||||||
Sbjct 29714 AGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGA 29655
Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
||||||||||| ||||| || || ||| || ||||| ||||| || || || || ||
Sbjct 29654 ATTCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTCTCAATGGTGTCCGAAGACTCCAC 29596
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||| | || || |||||||| || | || || ||||| || ||||||
Sbjct 29595 TTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981819501247468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |