Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq180 91.5 2e-13
seq578 82.4 1e-10
seq221 82.4 1e-10
>seq180
Length=2461
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 275 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 334
Query 8718 CCCGACGAGGAGCAG 8732
|||| || |||| ||
Sbjct 335 CCCGCCGGGGAGAAG 349
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 1292 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1351
Query 8718 CCCGACGAGGAGCAG 8732
|||| || |||| ||
Sbjct 1352 CCCGCCGGGGAGAAG 1366
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 2309 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 2368
Query 8718 CCCGACGAGGAGCAG 8732
|||| || |||| ||
Sbjct 2369 CCCGCCGGGGAGAAG 2383
Score = 87.8 bits (96), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 274 GTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 333
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 334 CCCCGCCGGGGAG 346
Score = 87.8 bits (96), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 1291 GTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 1350
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 1351 CCCCGCCGGGGAG 1363
Score = 87.8 bits (96), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 2308 GTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 2367
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 2368 CCCCGCCGGGGAG 2380
>seq578
Length=26444
Score = 82.4 bits (90), Expect = 1e-10
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|| || ||||||||||||||||||| ||| ||||| | |||| ||||||||||||||||
Sbjct 1612 TCTTCCTTAGTATAGTGGTTAGTATATCCGCCTGTCACGCGGGTGACCGGGGTTCGATTC 1553
Query 8718 CCCGA 8722
|||||
Sbjct 1552 CCCGA 1548
>seq221
Length=44452
Score = 82.4 bits (90), Expect = 1e-10
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|| || ||||||||||||||||||| ||| ||||| | |||| ||||||||||||||||
Sbjct 31029 TCTTCCTTAGTATAGTGGTTAGTATATCCGCCTGTCACGCGGGTGACCGGGGTTCGATTC 31088
Query 8718 CCCGA 8722
|||||
Sbjct 31089 CCCGA 31093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652839805737280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |