Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq33 96.9 2e-15 seq49 95.1 8e-15 >seq33 Length=72831 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || || ||||| ||||| ||||| ||| | || || | || Sbjct 32078 ATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTG 32019 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||||||||||| ||||||||||| | || | || || || || ||| || Sbjct 32018 CTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTT 31959 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | |||| || | |||||| || ||||| || || | ||||| || || |||| Sbjct 31958 -GGCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTG 31900 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || |||||||| ||||| Sbjct 31899 TAAGGGTCTTAACAAAGATTTGCAT 31875 >seq49 Length=10291 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| || || ||||||||| || || || || ||||| || | | | || || Sbjct 9968 CACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTC 10027 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || ||||| ||||| || | || ||||| || |||| | ||||||||||| Sbjct 10028 CAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTG 10087 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| || || |||| || | |||||| ||||| || || | |||||| |||| Sbjct 10088 GATTTTTTGCTT-TACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTT 10146 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || || | ||||| || ||||| ||||| || Sbjct 10147 TCCCAGTAAGTGTTTTGACGAAGATTTGCATGGT 10180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701548279040