Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq49 127 5e-24 seq33 93.3 1e-13 >seq49 Length=10291 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || ||||| ||||| | ||||| ||| ||| ||||| | ||| Sbjct 10163 CAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCAGACACCATTGAAAA 10104 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||||||||| || ||||| ||||||||||| ||| ||| ||| | ||||| || Sbjct 10103 TGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAGCAACGCCTTATATT 10044 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||||||| |||| |||||||| || | | || || || | || |||||||| Sbjct 10043 TGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAATATTCAAAAAGAGTC 9984 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || || || ||||||| ||| Sbjct 9983 AACCCTCCATCTAGTGCTGAGACTGCGA 9956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||||| || || || || || |||||||| || | ||||||||||| | || Sbjct 9956 TCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGT 10015 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| |||||||||||||| || || ||||| ||||| || Sbjct 10016 TCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTG 10060 >seq33 Length=72831 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || |||||| | || || ||| |||||| | || Sbjct 31890 AAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCCAGTGACACCATTGAGAAT 31949 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || ||||| || || || | || || || Sbjct 31950 GTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGATCAGCAGCGCCTGATTTTT 32009 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || |||||| | || | |||| ||||| ||||||| |||||| Sbjct 32010 GCCGGAAAGCAGCTTGAGGATGGACGTACACTTTCCGACTACAATATCCAGAAGGAGTCT 32069 Query 206365 ACTCTTCACCTTGT 206378 |||||||| ||||| Sbjct 32070 ACTCTTCATCTTGT 32083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181811533047652