Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq602 127 3e-23
seq113 86.0 9e-11
>seq602
Length=19998
Score = 127 bits (140), Expect = 3e-23
Identities = 357/532 (67%), Gaps = 31/532 (6%)
Strand=Plus/Minus
Query 1455792 AAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC 1455851
|||||| | | || ||||| ||||| | ||| ||||| ||||| || |
Sbjct 7375 AAAAAGTCGGTTGCTTCCTTCTGGACGGTCGAAGAGGTGGACCTGTCAAAGGATCTAACC 7316
Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911
|| |||| ||| |||| |||| || |||||||| ||| ||||| | |||||||||
Sbjct 7315 CATTGGGCGTCTCTGAATGACGGGGAACGCCATTTTATCTCTCACGTTTTGGCCTTTTTT 7256
Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971
|| ||| |||||| || || || || | | | |||||| | ||||| ||
Sbjct 7255 -GCAGCCTCCGATGGAATTGTAAATGAAAATTTAGTTGTTCGCTTTGCTAGGGAGGTGCA 7197
Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031
| | |||||||| ||||| |||||||||||||| ||| || ||||| ||||| |||||
Sbjct 7196 AATCCCAGAGGCTCGTTTCTTTTACGGGTTCCAAATCATGATGGAAAATATCCATTCTGA 7137
Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC------A 1456085
| || || || ||||| ||||| || | | || | ||| |||| | |
Sbjct 7136 GATGTATTCCCTTCTGATTGACACATATAT-----TCGCGAT-GAGCAGGAGCGTCTAAA 7083
Query 1456086 CCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144
| || ||||||||| | || | ||| ||||| ||| | ||||| |||
Sbjct 7082 ATTGTTCAACGCCATCGAATATATCCCTAGCATTGA-AAAAAAAGCCAAATGGGCTTTGA 7024
Query 1456145 AGTGGAT--CAACAAGGAG-GGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC 1456201
| ||||| ||| | || ||| | |||| | || | || || | ||||||||
Sbjct 7023 ACTGGATTGCAA-ATCCAGATGCC----CCCTTTTCGCAGAGACTGGTTGCATTTGCCGC 6969
Query 1456202 -GTCGAGGGCATCTT-TTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGC 1456258
|| |||||||| || ||| |||| ||| ||| |||||||||||| | || ||||||
Sbjct 6968 AGTTGAGGGCATATTCTTTTCCGGGTCGTT--TGCAGCCATCTTTTGGATAAAAAAGCGC 6911
Query 1456259 GGCCTCATGCCCGGTCTT-CTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309
|| || ||||| || ||| || ||| |||||| | |||||| | |||||
Sbjct 6910 GGTCTGATGCCTGGGCTTACT--TTTTCCAACGAGCTGATCAGTAGAGACGA 6861
>seq113
Length=5777
Score = 86.0 bits (94), Expect = 9e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 263193 GACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCT 263251
|||||||||||| | || ||| | | | |||||||||||| | ||||| | |||
Sbjct 3541 GACCGTGTGGGAAATTCCACAAAAGAGC-ATCATTGATATGGCCGTGGACCGAGGCGCCT 3483
Query 263252 ATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGACGGCCGAGAGCATCA 263311
| ||||||| |||||||| ||||| | || | ||||| || | | || |||
Sbjct 3482 TTATCGACCAAAGCCAGTCTCTCAATATTCACATTGCCGAGCCTTCCATCTCGAAGCTCA 3423
Query 263312 CGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCA 263371
| || ||||| || ||||| || || ||||| |||||||| |||||||| |
Sbjct 3422 CTTCTATGCATTTTTACTCGTGGAAAAAGGGGCTAAAGACCGGCATGTATTATCTGCGAA 3363
Query 263372 CCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATC 263410
| ||| || || | |||||| |||| ||||||||||
Sbjct 3362 CAAAGCCTGCAGCTGAAGCCATTAAATTTACCGTCGATC 3324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177752171475144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |