Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq602 127 3e-23 seq113 86.0 9e-11 >seq602 Length=19998 Score = 127 bits (140), Expect = 3e-23 Identities = 357/532 (67%), Gaps = 31/532 (6%) Strand=Plus/Minus Query 1455792 AAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC 1455851 |||||| | | || ||||| ||||| | ||| ||||| ||||| || | Sbjct 7375 AAAAAGTCGGTTGCTTCCTTCTGGACGGTCGAAGAGGTGGACCTGTCAAAGGATCTAACC 7316 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 || |||| ||| |||| |||| || |||||||| ||| ||||| | ||||||||| Sbjct 7315 CATTGGGCGTCTCTGAATGACGGGGAACGCCATTTTATCTCTCACGTTTTGGCCTTTTTT 7256 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 || ||| |||||| || || || || | | | |||||| | ||||| || Sbjct 7255 -GCAGCCTCCGATGGAATTGTAAATGAAAATTTAGTTGTTCGCTTTGCTAGGGAGGTGCA 7197 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | |||||||| ||||| |||||||||||||| ||| || ||||| ||||| ||||| Sbjct 7196 AATCCCAGAGGCTCGTTTCTTTTACGGGTTCCAAATCATGATGGAAAATATCCATTCTGA 7137 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC------A 1456085 | || || || ||||| ||||| || | | || | ||| |||| | | Sbjct 7136 GATGTATTCCCTTCTGATTGACACATATAT-----TCGCGAT-GAGCAGGAGCGTCTAAA 7083 Query 1456086 CCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 | || ||||||||| | || | ||| ||||| ||| | ||||| ||| Sbjct 7082 ATTGTTCAACGCCATCGAATATATCCCTAGCATTGA-AAAAAAAGCCAAATGGGCTTTGA 7024 Query 1456145 AGTGGAT--CAACAAGGAG-GGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC 1456201 | ||||| ||| | || ||| | |||| | || | || || | |||||||| Sbjct 7023 ACTGGATTGCAA-ATCCAGATGCC----CCCTTTTCGCAGAGACTGGTTGCATTTGCCGC 6969 Query 1456202 -GTCGAGGGCATCTT-TTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGC 1456258 || |||||||| || ||| |||| ||| ||| |||||||||||| | || |||||| Sbjct 6968 AGTTGAGGGCATATTCTTTTCCGGGTCGTT--TGCAGCCATCTTTTGGATAAAAAAGCGC 6911 Query 1456259 GGCCTCATGCCCGGTCTT-CTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || ||||| || ||| || ||| |||||| | |||||| | ||||| Sbjct 6910 GGTCTGATGCCTGGGCTTACT--TTTTCCAACGAGCTGATCAGTAGAGACGA 6861 >seq113 Length=5777 Score = 86.0 bits (94), Expect = 9e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 263193 GACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCT 263251 |||||||||||| | || ||| | | | |||||||||||| | ||||| | ||| Sbjct 3541 GACCGTGTGGGAAATTCCACAAAAGAGC-ATCATTGATATGGCCGTGGACCGAGGCGCCT 3483 Query 263252 ATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGACGGCCGAGAGCATCA 263311 | ||||||| |||||||| ||||| | || | ||||| || | | || ||| Sbjct 3482 TTATCGACCAAAGCCAGTCTCTCAATATTCACATTGCCGAGCCTTCCATCTCGAAGCTCA 3423 Query 263312 CGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCA 263371 | || ||||| || ||||| || || ||||| |||||||| |||||||| | Sbjct 3422 CTTCTATGCATTTTTACTCGTGGAAAAAGGGGCTAAAGACCGGCATGTATTATCTGCGAA 3363 Query 263372 CCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATC 263410 | ||| || || | |||||| |||| |||||||||| Sbjct 3362 CAAAGCCTGCAGCTGAAGCCATTAAATTTACCGTCGATC 3324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177752171475144