Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq612 98.7 9e-16 seq49 87.8 2e-12 >seq612 Length=74583 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | ||| | ||| |||||| ||||| || ||||| | | |||| | || || Sbjct 29757 CACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTC 29698 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||| || || ||||| |||| ||||||||||| | ||||| | |||||||| Sbjct 29697 AAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 29638 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||||||| | | | | ||||| || ||||| || | ||| || || || Sbjct 29637 GATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTT 29578 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| | ||||| ||||| || ||||||| Sbjct 29577 GCCCGTAAGTGTTTTGACAAAAATTTGCATTC 29546 >seq49 Length=10291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 || ||| || || | |||| ||| | ||| | || ||| |||||||| || || || Sbjct 9947 ATATCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTC 10006 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | | |||| | || ||||||||||| || |||||||| | || |||||||| | Sbjct 10007 AGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGG 10066 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTC 35685 || | | || ||||| ||| |||||||| | | || | | ||||| ||||| Sbjct 10067 CGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTC 10126 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||| ||||| || || | ||||| || || || ||||| Sbjct 10127 AACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790151428960