Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq612 138 1e-27
seq33 114 1e-20
>seq612
Length=74583
Score = 138 bits (152), Expect = 1e-27
Identities = 170/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544
|||||| | || || | ||| || || |||||||| ||||| ||||| || || || |
Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| | | | | || || |||||||||||||||||||||| |||||||| || || |
Sbjct 29715 GAGTGTTCTTCCA-TCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAG 29657
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || ||||| || ||||| ||||| || || || || | ||||| || || ||||
Sbjct 29656 GAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCA 29597
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
| ||||| |||||||| || || || | ||||| || ||||||||||||
Sbjct 29596 CTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
>seq33
Length=72831
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | |||||| | || || || || || || ||||| || || ||||||||| |
Sbjct 32101 CCACCACGGAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 32042
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || ||||| || || |||||||||| |||||||||||||| ||
Sbjct 32041 AGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGG 31982
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || |||||||| || ||||| || | ||||| ||||| ||
Sbjct 31981 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACC 31922
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|||||||| ||||| || || || | || ||||| || |||||||| |||
Sbjct 31921 TCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCATCTTG 31871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394533702240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |