Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq612 138 1e-27 seq33 114 1e-20 >seq612 Length=74583 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 |||||| | || || | ||| || || |||||||| ||||| ||||| || || || | Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | | | | || || |||||||||||||||||||||| |||||||| || || | Sbjct 29715 GAGTGTTCTTCCA-TCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAG 29657 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| ||||| || || || || | ||||| || || |||| Sbjct 29656 GAATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCA 29597 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| |||||||| || || || | ||||| || |||||||||||| Sbjct 29596 CTTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq33 Length=72831 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | || || || || || || ||||| || || ||||||||| | Sbjct 32101 CCACCACGGAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 32042 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| || || |||||||||| |||||||||||||| || Sbjct 32041 AGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGG 31982 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| || | ||||| ||||| || Sbjct 31981 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACC 31922 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| ||||| || || || | || ||||| || |||||||| ||| Sbjct 31921 TCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCATCTTG 31871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394533702240