Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq113 210 3e-49 seq602 174 2e-38 >seq113 Length=5777 Score = 210 bits (232), Expect = 3e-49 Identities = 1169/1849 (63%), Gaps = 64/1849 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||| | ||||| | | ||| || ||||| || ||||| ||||| ||||| || || Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGA-AT--AACTTGGATCGGCT 68490 || |||| ||| ||||||||| || || || || || || || ||||| Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 68491 ATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTT 68550 || |||||||| | || || ||||| ||||| || || |||| || | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 68551 ATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGA 68610 || || |||||||| ||||||||||| | ||| || ||| || | || || || ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 68611 AGGCTCG----TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCAT- 68665 | |||| |||| ||| || ||| | | | ||| || || | || ||| Sbjct 3569 AT-CTCGGGTATATTCGCAATTGAGCCA---TTGTTTGCAATGATC--CTGGTTCGCATA 3622 Query 68666 ----CATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 ||| |||||| | | | ||| | ||| ||||| |||| | |||||| Sbjct 3623 GACGCATCCCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTGAGAATTTGA 3682 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 ||||| || |||||||||| | || || ||||| || || | || | |||| Sbjct 3683 AATTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCAAAGCATTCG 3742 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 || || | ||||| | || || || || ||||| || || | | || || Sbjct 3743 TTGAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTTC 3802 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA--AAGATCAGATG 68899 |||| |||| | | || | || | ||||||||| ||||| |||| Sbjct 3803 CTAACGCCATACTTGGCAACCTTCGCACGAAGGGAATCCCAATCCCATAAAGAT--GATG 3860 Query 68900 GTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA----TCCATTA 68955 | ||||||||||| | ||| |||| | || || | | | ||| ||| | Sbjct 3861 GCACAACATTCCACATGTCGAATTGAAAGATGCCCTGAG----AAATGGGGCTTCCCTGG 3916 Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACA--ACTTGCCTCTAATGCACCGT 69013 || | || || | || || | ||| || ||||| ||| ||| | ||| | | Sbjct 3917 TAAGACTCGTATGTACCAGTTTGCTGAGCCAGCTCACACGACTG--CTCAAGAGCAGCAT 3974 Query 69014 AATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG-A 69072 || ||||| || || ||||| | || | ||| | ||| | || || || || | Sbjct 3975 GGTATATTGTCTCAAATATCTTTATGTTCAATTCTCGCGCTGGAGGGCTGTCAAAAGGCA 4034 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 | || | || || | |||||| | || || || ||||| || || ||||||||| Sbjct 4035 TTTTGCATCGTAAGAAC-GTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGT 4093 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 ||| ||||||| | ||| || | |||||| | || | ||| ||||| |||||| Sbjct 4094 CTCATATTTGATCGCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTA 4153 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC- 69251 |||||| ||| ||||| | || | | ||| | ||||||||| || || Sbjct 4154 AGATTTTTTGTTACCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCCGTCG 4213 Query 69252 --TATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT---TA 69306 | | | |||||| ||||| | || || || |||||||| | ||||||| | Sbjct 4214 CTTTTGATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTT 4273 Query 69307 GAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTT 69366 || || || || || || |||||||| | || | |||||| |||||||| ||| Sbjct 4274 GA---TGAGTACTGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTT 4330 Query 69367 TGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426 | |||||| |||| ||| || | || || | || || | || || || ||||| Sbjct 4331 TTTTGATTAGACTTTGCGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCC 4390 Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGG-TCTTGTAACG 69485 | || | || | ||| | | ||| || | | || | || || | | ||| Sbjct 4391 ACTTGCGCATCAAGAATGGCATACCA---GAGCTT----TTGGGCAGGGATCGTTTTACG 4443 Query 69486 --CTTCTCTTTT----TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATC 69539 | | ||| |||||| | ||||| | ||| || || ||||||| || Sbjct 4444 ACCAAGACCTTTGGCCTCATATGAAGCATATAACTCTTCAAACTCCGGTCCCCAACAGTC 4503 Query 69540 ATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCG 69599 ||| || ||| ||||||||||| | | | ||||| |||| | || ||||| Sbjct 4504 GGACAAACCTGGAGCGTCATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCG 4563 Query 69600 TTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||| || |||||||| ||||| || || ||| ||||| ||| | | || || Sbjct 4564 TTTCATGAACAGATCGGGTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTC 4623 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 ||||| |||||| || | ||| | || || | || ||||| ||||| || || | Sbjct 4624 TTTTCCAAAATTTTTCTTTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAA 4683 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 ||| || || | | | || ||||||||||| || || ||||| | |||| ||||| | Sbjct 4684 ATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCAT 4743 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 |||||||| | ||||| || | ||||| || || | ||| |||||||| |||||| Sbjct 4744 GTTATAGACACGAAGCATGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATATA 4803 Query 69840 ACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGAT 69899 | || || | |||||| ||| ||||| | || || || || || Sbjct 4804 AGACCCAGAGGCTCTTATATTATGGATATGAAGACCAACACCCCCGGCAGACTTGCTAAT 4863 Query 69900 TAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 | ||||| ||||| ||||||||||| || || ||| || |||| || Sbjct 4864 CAATGCACATGTTTTCAGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAAT 4923 Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 | ||||||| || | || | | || || |||||||| | || || || || Sbjct 4924 CAAAAAACAGGATGAAAGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGC 4983 Query 70020 GTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CC 70078 || |||||| | ||| | || ||| || ||||| || || || || | || | Sbjct 4984 ATGGGTGAACATCCGCTGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTC 5043 Query 70079 ACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTAT 70138 || | ||||| || | ||| || | ||| | || || ||| || || || || || Sbjct 5044 ACCG-TGAATGCCAAGCGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTTGC 5102 Query 70139 TATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATA 70187 | ||| ||| ||| || || || || |||||||| |||||||| Sbjct 5103 CCCTGATTCTCAGCAGATACGAACGCTCAAGGGTTTTAAATCCAAAATA 5151 >seq602 Length=19998 Score = 174 bits (192), Expect = 2e-38 Identities = 385/575 (67%), Gaps = 7/575 (1%) Strand=Plus/Plus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 |||||| ||||| |||||||| || | ||||| ||||| || || |||||||| ||||| Sbjct 6851 ATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGCATCAGACC 6910 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 |||||||| | |||||| ||||| ||||| || || |||||||| ||||| || ||||| Sbjct 6911 GCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCCTCAACTGC 6970 Query 39751 TGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATC---ATTATGTATCCACTTCTGT 39805 ||||||||||| || ||||| || || | ||| ||| ||||| ||| Sbjct 6971 GGCAAATGCAACCAG--TCTCTGCGAAAAGGGGGCATCTGGATTTGCAATCCAGTTCAAA 7028 Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865 ||||| | ||||| || | | | ||| || ||| || || || || | | | Sbjct 7029 GCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAATTTTAGA 7088 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 || | ||| || |||||| || || | || |||||| || |||||||| Sbjct 7089 CGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACATCTCAGAATGGATA 7148 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||| ||| || || || |||||||| | | || || | ||||| ||||| | Sbjct 7149 TTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGATTTGCACCTCCCTA 7208 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 ||| | | | ||||||||||| || |||||||| || |||||||| ||||| Sbjct 7209 GCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGCAAAAAAGGCCAAA 7268 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 || || ||||||| ||| || ||| ||| | | | ||| ||| Sbjct 7269 ACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATGGGTTAGATCCTTT 7328 Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCAT 40165 || | || || ||||| | ||||| || || || | | |||||| || | ||| Sbjct 7329 GACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTTATAAAAAAGCCAG 7388 Query 40166 ATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || || ||||| ||||||||||| || ||||| Sbjct 7389 ATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903545147680