Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq602 235 4e-57 seq34 82.4 6e-11 >seq602 Length=19998 Score = 235 bits (260), Expect = 4e-57 Identities = 598/905 (66%), Gaps = 16/905 (2%) Strand=Plus/Minus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 |||| | | ||| ||||| || || || || | |||||||| ||||| | || || || Sbjct 7445 TTTGTTGAGAGATAATCCTTCCAGATTCGTGATTTTTCCAATCAAATATGAGGAAATCTG 7386 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 || | || ||||| | || || || ||||| | ||||| || || || | || Sbjct 7385 GCTTTTTTATAAAAAGTCGGTTGCTTCCTTCTGGACGGTCGAAGAGGTGGACCTGTCAAA 7326 Query 43795 AGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || | |||||| | | || ||| |||||||| ||| ||||| Sbjct 7325 GGATCTAACCCATTGGGCGTCTCTGAATGACGGGGAACGCCATTTTATCTCTCACGTTTT 7266 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 ||| |||||||| || ||| || || || ||||||||||| ||| ||| ||||| Sbjct 7265 GGCCTTTTTTGCAGCCTCCGATGGAATTGTAAATGAAAATTTAGTTGTTCGCTTTGCTAG 7206 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 || || ||| | ||||| || || | ||||| ||||| ||||| || |||||||| Sbjct 7205 GGAGGTGCAAATCCCAGAGGCTCGTTTCTTTTACGGGTTCCAAATCATGATGGAAAATAT 7146 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| || ||||| |||||||| || || || || |||| ||| ||| | Sbjct 7145 CCATTCTGAGATGTATTCCCTTCTGATTGACACATATATTCGCGATGAGCAGGAGCGTCT 7086 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 |||||| || || || ||| | ||| ||| || | ||||| | ||||| | Sbjct 7085 AAAATTGTTCAACGCCATCGAATATATCCCTAGCATTGAAAAAAAAGCCAAATGGGCTTT 7026 Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTT--GGAGAACGACTTGTCGCGTTTGCAGTT 44149 || ||||| |||| || ||| | ||| | ||| |||| || || ||||| | Sbjct 7025 GAACTGGATTGCAAATCCAGATGCCCCCTTTTCGCAGA--GACTGGTTGCATTTGCCGCA 6968 Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 || || ||||| |||||||| || |||||||| ||||| |||||| |||| || || ||| Sbjct 6967 GTTGAGGGCATATTCTTTTCCGGGTCGTTTGCAGCCATCTTTTGGATAAAAAAGCGCGGT 6908 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 ||||||||||| | || ||||| || ||| | || ||| | || || || ||||| | Sbjct 6907 CTGATGCCTGGGCTTACTTTTTCCAACGAGCTGATCAGTAGAGACGAGGGTCTACATACC 6848 Query 44270 GATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATT 44329 || |||||||| | |||| | | || || | ||||| || | | | ||| Sbjct 6847 GAGTTTGCTTGTCTATTACATTCCCACCT--GA----AAAAGCCGGCAGATCCGGCGATT 6794 Query 44330 ACAGAT---ATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386 | | || ||| | | ||||| || | || ||||| ||| || | | Sbjct 6793 ATATATGCCATTATCGATGAGGCCGTTAGTATTGAACAGTCTTTTTTGGTTGATTCTCTG 6734 Query 44387 CCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCA 44446 || || | |||| || |||||| || ||||| || ||||| | | |||| Sbjct 6733 CCGGTCGACCTAATTGGTATGAATTCCACCTTAATGAAGCAGTATATCTGCTTCGTTGCC 6674 Query 44447 GATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGAT 44506 ||| | | || | ||| |||| |||| |||| ||| |||||||||||||| Sbjct 6673 GATAGACTTCTGCTCTCACTTGGTTTGTCAAAACTGTATAATGTCGAAAACCCGTTTGAT 6614 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 || ||||| ||||| || ||| |||| |||||||||||||| ||||| ||| Sbjct 6613 TTCATGGATTTAATTTCCATGTCAGGAAAAAGCAACTTTTTTGAAAAGAAAGTTGGCGAA 6554 Query 44567 TATCA 44571 ||||| Sbjct 6553 TATCA 6549 >seq34 Length=12892 Score = 82.4 bits (90), Expect = 6e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || ||||||||||| |||||||| | || |||||||| ||||||||||| || || Sbjct 4400 CCGAAGATTGTAAATGGCCCTGAAATTCTGAACAAATATGTGGGTCAATCGGAGGAGAAC 4459 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || | ||||| || || |||| ||| | ||| | |||| | | ||| Sbjct 4460 GTTAGGAACCTGTTTAAAGATGCCGAAGTCGAATACAAA-GCAAAGGGAGACGACTCTCT 4518 Query 19549 -TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC 19601 |||| ||||| ||| | || || ||||| || || |||||||||||||| || Sbjct 4519 ACTGCATATTATCATATTTGACGAGTTGGATGCCATATGTAAGCAAAGAGGCTC 4572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453035475060