Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq49 86.0 5e-12
seq33 86.0 5e-12
>seq49
Length=10291
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| |||| | || || | ||| | || || |||||||||||||| |||||
Sbjct 9951 CCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAG 10010
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | || || ||||| || || || | || || || || || || |||||
Sbjct 10011 AGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGT 10070
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || ||||| || ||| || | || | |||| | ||||||| | |||||||
Sbjct 10071 ATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACT 10130
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| || || | ||| || || || ||||| || |||||||||||
Sbjct 10131 TCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq33
Length=72831
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097
||| | ||| | ||||| || || || |||||||||||| | | || | || ||
Sbjct 32084 TACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTC 32025
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
||||| || ||||| |||| || ||||| ||||| || || | ||||| |||||
Sbjct 32024 AAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTG 31965
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
|||||| || | | || | ||||| ||| ||| || || ||||| || | ||
Sbjct 31964 AATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTT 31905
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || || ||||||||||||||
Sbjct 31904 TCCTGTAAGGGTCTTAACAAAGATTTGCAT 31875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424931230520544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |