Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq113 237 2e-57 seq122 87.8 2e-12 >seq113 Length=5777 Score = 237 bits (262), Expect = 2e-57 Identities = 684/1043 (66%), Gaps = 22/1043 (2%) Strand=Plus/Plus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| || |||||||| || || | ||||| ||||| |||| |||||| || |||| Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGA---TCGCCT 4110 Query 111112 AGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 || ||| || ||||| || || || || | || |||||||| || || | Sbjct 4111 AGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCAC 4170 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 || | | | ||| || | ||| ||||||||| | ||| ||| |||| | || | Sbjct 4171 TTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCC-GTCGCTT--TTGATAAACAT 4227 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||||| || || || || | || ||||| | |||||| || || ||||| | Sbjct 4228 CGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGAT 4287 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 ||||||||||| ||||| || || || || ||||||| || ||||| ||| ||| Sbjct 4288 GATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGC 4347 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 |||||| | ||| || |||||||||| ||||| || || ||| || | | ||||| Sbjct 4348 GTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAAT 4407 Query 111409 AGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG-GCCC--GTCCCTCCGCCTCGTA 111465 || | ||| | | ||| || | | | || | || | || | ||||| || Sbjct 4408 GGCATACCAGAGCTTTTGGGCAGGGA---TCGTTTTACGACCAAGACCTTTGGCCTCATA 4464 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCC--TCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 | || | ||||||||||| || || || |||||| | |||||| || | Sbjct 4465 TGAAGCATATAACTCTTCAAACTCCGGTCCCCAAC--AGTCGGACAAACCTGGAGCGTCA 4522 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | |||||||||||||| ||| ||| ||| ||| || || |||||||| || || || Sbjct 4523 TTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGT 4582 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||| |||| |||| ||||| || |||||| |||| || | || || | Sbjct 4583 ATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTT 4642 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 || || | ||| || | | ||| |||||||| ||||| | ||| | ||| | | || Sbjct 4643 AAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCA 4702 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 ||| | ||| |||||| ||||| || || || |||| | || |||||||| Sbjct 4703 GGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATG 4762 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 || | ||||| | ||| | ||| ||| || |||| ||| | |||||| | | Sbjct 4763 GGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATA 4822 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | |||||| || | |||| |||||| || |||| || ||||| | || Sbjct 4823 TTATGGATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGG 4882 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || |||| || ||| |||| || || || | | || || | || || || | | Sbjct 4883 GTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGC 4942 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || | |||||||| ||||| || |||||||| | || || ||||||| | || Sbjct 4943 TGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGA 5002 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | || || || | | |||| || | |||||| ||||| ||||| | || Sbjct 5003 GACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCA 5062 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || | ||||| || ||||| || Sbjct 5063 ACTCTCATGATCAGATACTGGGG 5085 >seq122 Length=58243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGA 11687 ||||| ||||||||||| || |||||||| ||| | ||||||| || |||||| | Sbjct 23020 GCATCGATCTCATCAATAAACACAATACAAGGTGCTATTTTTCGC--GCTTCTTCAAATA 23077 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| || || | ||||| |||||||||||||| |||||||| | || | || Sbjct 23078 GATCACGGACACGAGAAGCACCGACACCAACAAACATTTCCACAAATTCGGCCCCCGA-- 23135 Query 11748 ACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 | ||| | ||||| || | | || || || || || |||||| ||||||||||| Sbjct 23136 AATGGAAAGAAATGGAACCTCGGCCTCCCCGGCCATCGCCTTGGCGAGAAGGGTCTTTCC 23195 Query 11806 CGTACCTGG 11814 || || || Sbjct 23196 GGTTCCAGG 23204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027195555200