Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq113 221 1e-52
>seq113
Length=5777
Score = 221 bits (244), Expect = 1e-52
Identities = 675/1037 (65%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 118526 ATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGC 118585
||| || ||||||||||| || | ||||| || | |||||||||||| || || |||
Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGC 4113
Query 118586 GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645
||| || ||||| || || |||||||| |||| |||||||| || || || ||
Sbjct 4114 CTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTT 4173
Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705
| | | ||| ||| | || |||||||| | ||| ||| |||| | || | ||
Sbjct 4174 GGCAACATAATGTAGCATATCAAAATCAAAAGACCC-GTCGCTT--TTGATAAACATCGG 4230
Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765
||| || || || || || ||||| || || |||||| || | ||||| || ||
Sbjct 4231 AAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGATGAT 4290
Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825
||| || ||||||||||| || || ||||| |||| ||| |||||||| ||||||| |||
Sbjct 4291 TTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTT 4350
Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885
|| | ||| || | |||||||||||||| || || ||| ||| | | ||||| ||
Sbjct 4351 GCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGC 4410
Query 118886 CTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945
| ||||| | || || | || | | || | |||| || |
Sbjct 4411 ATACCAGAGCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGC 4470
Query 118946 GTAGAGGGCTTCAAACTC--TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003
|| | |||||||||| || || || | || || | ||||| || | || |||
Sbjct 4471 ATATAACTCTTCAAACTCCGGTCCCCAACAG--TCGGACAAACCTGGAGCGTCATTTGGA 4528
Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063
||||| |||| ||| ||| | | ||| || || |||||||| || || || |||||
Sbjct 4529 CAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCAT 4588
Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123
|| || | || ||||||| || ||| | || || | || ||| || |||
Sbjct 4589 AGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCC 4648
Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA 119183
|| || || | | ||| |||||||| || |||| || | || | | || ||
Sbjct 4649 AAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGT 4708
Query 119184 CGA--CCAGCC-TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240
| || ||| || | ||||| | ||||| |||| | ||||||||||| || |
Sbjct 4709 TTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACT 4768
Query 119241 ATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGG 119300
||||| | || | |||| ||| || |||| |||| | |||||| | || |||
Sbjct 4769 ATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGG 4828
Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360
|| || | ||||| |||||| || |||| || || || | || || |
Sbjct 4829 ATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCA 4888
Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420
|| || || |||||| || | | |||| || | || ||| || | || |||
Sbjct 4889 TATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGC 4948
Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 119480
| |||||||| || || || || ||||| | || ||| ||||||| | || ||||||
Sbjct 4949 CGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATC 5008
Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540
| || || || | | | | | | |||||| |||||||| || | || || | |
Sbjct 5009 AAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCAACTCTC 5068
Query 119541 ATAAACATGTATTGGGG 119557
|| | || || |||||
Sbjct 5069 ATGATCAGATACTGGGG 5085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430468970720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |