Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq113 221 1e-52 >seq113 Length=5777 Score = 221 bits (244), Expect = 1e-52 Identities = 675/1037 (65%), Gaps = 10/1037 (1%) Strand=Plus/Plus Query 118526 ATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGC 118585 ||| || ||||||||||| || | ||||| || | |||||||||||| || || ||| Sbjct 4054 ATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGC 4113 Query 118586 GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 ||| || ||||| || || |||||||| |||| |||||||| || || || || Sbjct 4114 CTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTT 4173 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705 | | | ||| ||| | || |||||||| | ||| ||| |||| | || | || Sbjct 4174 GGCAACATAATGTAGCATATCAAAATCAAAAGACCC-GTCGCTT--TTGATAAACATCGG 4230 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 ||| || || || || || ||||| || || |||||| || | ||||| || || Sbjct 4231 AAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAGTACTGGATGAT 4290 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||| || ||||||||||| || || ||||| |||| ||| |||||||| ||||||| ||| Sbjct 4291 TTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTT 4350 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 || | ||| || | |||||||||||||| || || ||| ||| | | ||||| || Sbjct 4351 GCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGC 4410 Query 118886 CTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 | ||||| | || || | || | | || | |||| || | Sbjct 4411 ATACCAGAGCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGC 4470 Query 118946 GTAGAGGGCTTCAAACTC--TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 || | |||||||||| || || || | || || | ||||| || | || ||| Sbjct 4471 ATATAACTCTTCAAACTCCGGTCCCCAACAG--TCGGACAAACCTGGAGCGTCATTTGGA 4528 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 ||||| |||| ||| ||| | | ||| || || |||||||| || || || ||||| Sbjct 4529 CAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCAT 4588 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123 || || | || ||||||| || ||| | || || | || ||| || ||| Sbjct 4589 AGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCC 4648 Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA 119183 || || || | | ||| |||||||| || |||| || | || | | || || Sbjct 4649 AAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGT 4708 Query 119184 CGA--CCAGCC-TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240 | || ||| || | ||||| | ||||| |||| | ||||||||||| || | Sbjct 4709 TTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACT 4768 Query 119241 ATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGG 119300 ||||| | || | |||| ||| || |||| |||| | |||||| | || ||| Sbjct 4769 ATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGG 4828 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 || || | ||||| |||||| || |||| || || || | || || | Sbjct 4829 ATATGAAGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCA 4888 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 || || || |||||| || | | |||| || | || ||| || | || ||| Sbjct 4889 TATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGC 4948 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 119480 | |||||||| || || || || ||||| | || ||| ||||||| | || |||||| Sbjct 4949 CGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATC 5008 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 | || || || | | | | | | |||||| |||||||| || | || || | | Sbjct 5009 AAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCGTGAATGCCAAGCGCAACTCTC 5068 Query 119541 ATAAACATGTATTGGGG 119557 || | || || ||||| Sbjct 5069 ATGATCAGATACTGGGG 5085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430468970720