Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq113 192 7e-44 seq602 91.5 2e-13 seq122 84.2 3e-11 >seq113 Length=5777 Score = 192 bits (212), Expect = 7e-44 Identities = 670/1039 (64%), Gaps = 14/1039 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||||| || ||||| | || || | || ||||| || |||||| | || |||| | Sbjct 5085 CCCCAGTATCTGATCATGAGAGTTGCGCTTGGCATTCACGGTGAAGACGTCGACTCTGCC 5026 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || || || | |||||| || | ||||||| || || | |||||||| || Sbjct 5025 ATCGAAACGTATAATTTGATGTCTCAGCGGATGTTCACCCATGCCTCCCCAACCCTTTTT 4966 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||| |||||||| | ||||| | || || || | || || | | || || Sbjct 4965 AATGCCGGTACACCGCGGCCCCAGCTTTCATCCTGTTTTTTGATTGCAATGACTGACGAT 4906 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || |||| ||| || |||| || || | ||||| || |||| || ||| Sbjct 4905 TCGATCACCGGAATATATGACACCCTGAAAACATGTGCATTGATTAGCAAGTCTGCCGGG 4846 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 ||| |||| | || |||||| || | |||||| | ||| |||| || ||| | Sbjct 4845 GGTGTTGGTCTTCATATCCATAATATAAGAGCCTCTGGGTCTTATATTGCTGGAACAGGT 4786 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || | ||| | ||||| | || |||||||| || | |||| || || || ||||| Sbjct 4785 GGCTACTCAAACGGTATAGTCCCCATGCTTCGTGTCTATAACATGACTGCACGATATGTC 4726 Query 104582 AATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638 |||||| ||| | ||| || | | ||| | ||| | ||||| |||||||| Sbjct 4725 GATCAAGGCGGGAATAAACGACCTGGCGCCTTTGCAATTTATTTGGAGCCCTGGCACGCT 4666 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGC 104698 ||| | | || ||| | || || || || | || |||| |||||| | Sbjct 4665 GATGTTTTCGATTTCTTGGATTTAAAGAAAAATTTTGGAAAAGACGAGGGTCGGTGCAGG 4606 Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| || | || || ||||| || ||||| |||||||| |||| ||| | ||| Sbjct 4605 GATCTTTTTTATGCCCTATGGATACCCGATCTGTTCATGAAACGAGTGGAGCAAGATGGG 4546 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA--GG 104816 | ||| |||| || |||||| | | || || ||| | ||||| | || || || || Sbjct 4545 ATGTGGACTCTTTTCTGTCCAAATGACGCTCCAGGTTTGTCCGA--CTGTTGGGGACCGG 4488 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTGCC 104874 ||||||||| | || | || |||| |||||| || || | ||| | || Sbjct 4487 AGTTTGAAGAGTTATATGCTTCATATGAGGCCAAAGGTCTTGGTCG--TAAAACGATCCC 4430 Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934 || | | ||| | || ||||| | | ||| || || || || |||||||| Sbjct 4429 TGCCCAAAAGCTCTGGTATGCCATTCTTGATGCGCAAGTGGAAACCGGAACGCCATACAT 4370 Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994 ||| | ||||| | || ||| |||| ||||||||| || |||| ||||| || Sbjct 4369 GCTCTTTAAAGATTCTTGCAACGCAAAGTCTAATCAAAAAAACCTGGGGACCATCAAAAG 4310 Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054 || || | |||||||||||| | | | || ||||||||| | || ||||| Sbjct 4309 CTCAAACTTGTGTACAGAAATCATCCAGTACTCATCAAAAGATGAGGTTTCCGTTTGTAA 4250 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114 |||||| || || || || || | || | | | || ||| | | ||||||| ||| Sbjct 4249 CCTCGCTTCCATTGCACTTCCGATGTTTATCAA--AAGCGAC-GGGTCTTTTGATTTTGA 4193 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 | || || | ||| | ||| || || ||||| || || | |||| ||| || Sbjct 4192 TATGCTACATTATGTTGCCAAAGTGGTAACAAAAAATCTTAATAATATTATCGATGTCAA 4133 Query 105175 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 || || || || ||| ||| | ||| ||||||||||| | || ||||| | || Sbjct 4132 CTTCTATCCTGTCGAGGAGGCTAGGCGATCAAATATGAGACATAGACCGATTGGAATTGG 4073 Query 105235 TGTTCAGGGTCTCGCGGAT 105253 || || ||||| || ||| Sbjct 4072 CGTCCAAGGTCTTGCAGAT 4054 >seq602 Length=19998 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAAAGTCGCGTTCCTTT 94800 ||| |||| ||||| | |||||| |||| ||| ||| || || | | | ||||| Sbjct 7051 ATTGAAAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAAATCCAGATGCCC---CCTTT 6995 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 | || |||| | |||||||| |||||||| || ||||| || || || || ||| Sbjct 6994 TCGCAGAGACTGGTTGCATTTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTT-TGC 6936 Query 94861 -GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCT 94919 || || | |||| | || ||||| ||||| ||||| || || || ||||||||||| Sbjct 6935 AGCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCTTACTTTTTCCAACGAGCT 6876 Query 94920 TATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| | | |||||||| || || |||||||| Sbjct 6875 GATCAGTAGAGACGAGGGTCTACATACCGAGTTTGC 6840 >seq122 Length=58243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGAC 9753 |||| | ||||| ||||||||||| || || || || ||| | ||||||| || | Sbjct 23012 TTCCAATTGCATCGATCTCATCAATAAACACAATACAAGGTGCTATTTTTCGC--GCTTC 23069 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||||| ||||| || ||||| || || |||||||||||||| |||||||| | || Sbjct 23070 TTCAAATAGATCACGGACACGAGAAGCACCGACACCAACAAACATTTCCACAAATTCGGC 23129 Query 9814 GGCGGAACATTGGATG-AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | ||| || | | | || || || | | || || || || || ||||||||| | Sbjct 23130 CCCCGAA-ATGGAAAGAAATGGAACCTCGGCCTCCCCGGCCATCGCCTTGGCGAGAAGGG 23188 Query 9873 TCTTACCCGTACCTGG 9888 |||| || || || || Sbjct 23189 TCTTTCCGGTTCCAGG 23204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256338054880