Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq33 188 8e-43 seq612 183 3e-41 seq49 141 1e-28 seq113 95.1 1e-14 seq602 82.4 9e-11 >seq33 Length=72831 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| ||||| || ||||| || ||||| ||||| || || || Sbjct 31875 ATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCCAGT 31934 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||| || ||||||||||| || || || ||| Sbjct 31935 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGATCAG 31994 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| || ||||||| ||||| || | ||||| ||| Sbjct 31995 CAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTTCCGACTACAAT 32054 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||||| || | || || || ||||| Sbjct 32055 ATCCAGAAGGAGTCTACTCTTCATCTTGTACTCCGACTCCGTGGTGG 32101 >seq612 Length=74583 Score = 183 bits (202), Expect = 3e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || ||||| |||||||| ||||| || || || ||||| Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| ||||| ||||| || |||||||| ||||||||||||||||| Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || |||||||| || || || || ||||||| | || || | || ||||| Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || ||||| ||||| || ||||| || | ||||||||||| ||| Sbjct 29727 TATTCAGAAGGAGTCCACGCTCCATCTTGTGCTTCGTCTTCGCGGAGGA 29775 >seq49 Length=10291 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || ||||| || || || || || || || ||||| || Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||| ||||| || ||||| || ||||| || || |||||| Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || |||||||| ||||| || ||||||| | || || | ||||||||| Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAAT 9998 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || || || || |||||||| || | || || || ||| Sbjct 9997 ATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGGA 9950 >seq113 Length=5777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||| |||||||| ||||| || ||||| ||||| ||| | ||||||||| Sbjct 3362 GTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTAAAAATGCATAGAA 3421 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||||| | | || | | ||| || || |||||||| || ||| Sbjct 3422 GTGAGCTTCGAGATGGAAGGCTCGGCAATGTGAATATTGAGAGACTGGCTTTGGTCGATA 3481 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || || || || | ||||| ||||| || |||||||||||||||||| || || Sbjct 3482 AAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTTTTGTGGAATTTCCCACACGGTC 3541 Query 80218 CGATA 80222 | ||| Sbjct 3542 CTATA 3546 >seq602 Length=19998 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || |||||| || || || || |||||||| ||||| || | || || ||| || Sbjct 6979 GCATTTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTTTGCAGCCATCTTTTGGATA 6920 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 |||||||| || |||||||| || || | ||||| |||||||||||| | | |||||| Sbjct 6919 AAAAAGCGCGGTCTGATGCCTGGGCTTACTTTTTCCAACGAGCTGATCAGTAGAGACGAG 6860 Query 64846 GGGCTCCA 64853 || || || Sbjct 6859 GGTCTACA 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306037125440